Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10k04
(809 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1055 - 33798162-33798290,33798417-33798604,33798707-337987... 127 1e-29
12_02_0137 + 14153603-14153629,14154136-14154586,14155066-141552... 114 9e-26
09_01_0155 - 2301903-2302151,2302334-2302491,2302651-2302819,230... 33 0.27
07_01_0203 + 1469575-1470045 31 1.1
07_01_0199 - 1420982-1421452 31 1.1
07_01_0195 - 1387831-1388301 31 1.1
07_01_0191 - 1354678-1355148 31 1.1
07_01_0187 - 1321525-1321995 31 1.1
08_02_0405 + 16790720-16791691,16792064-16792135,16794487-167946... 30 1.9
08_02_0307 - 15612761-15612856,15613879-15613950,15614325-15615290 30 2.5
11_06_0181 + 20985960-20987825,20987904-20989169 29 3.3
07_03_0604 + 19903654-19904598 29 3.3
05_04_0345 + 20451497-20451740,20452078-20452159,20452837-204528... 29 3.3
03_05_0263 + 22503943-22506240 29 3.3
05_03_0478 - 14526180-14526578 29 4.4
03_06_0449 - 34013973-34014056,34014595-34014630,34014729-340148... 29 4.4
01_06_0251 - 27885236-27885775,27887383-27887529 29 5.8
05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787... 28 7.6
01_05_0758 + 24954701-24954793,24954907-24955086,24955676-249558... 28 7.6
>02_05_1055 -
33798162-33798290,33798417-33798604,33798707-33798767,
33799045-33799122,33799250-33799472,33799599-33799824,
33799922-33800116,33800210-33800627,33800904-33801182
Length = 598
Score = 127 bits (306), Expect = 1e-29
Identities = 80/214 (37%), Positives = 115/214 (53%), Gaps = 7/214 (3%)
Frame = -2
Query: 766 VVIAAKGVTFDSGGLCLKKRE--SMVENRGSMXXXXXXXXXXXXXXXLQVP-INVCAVIP 596
+ I KG+TFDSGG +K S+ + M ++ P + V ++
Sbjct: 362 LAIVGKGLTFDSGGYNIKTGPGCSIELMKFDMGGSAAVFGAAKALGQIKPPGVEVHFIVA 421
Query: 595 ICENMVSGQCMKVGDVVRALNGLSIQIEDTDMEGRLMLADALVY--GQAVHKPELVIDVA 422
CENM+SG M+ GD+V A NG +I++ +TD EGRL LADALVY Q V K +ID+A
Sbjct: 422 ACENMISGTGMRPGDIVTASNGKTIEVNNTDAEGRLTLADALVYACNQGVDK---IIDLA 478
Query: 421 TFTRGVLQALGGAACGCYTESEALWRDVTAAGARSGDRAWRLPLWDYYRRQITDDPSVDL 242
T T + ALG + G +T S+ L ++V AA SG++ WR+PL + Y + + D+
Sbjct: 479 TLTGACVVALGPSIAGIFTPSDELAKEVAAASEISGEKFWRMPLEESYWESMKSGVA-DM 537
Query: 241 RNKGSGKATSCLGAAFLKSFV--CCSWLHVDTTG 146
N G + S A FLK FV W+H+D G
Sbjct: 538 VNTGGRQGGSITAALFLKQFVDEKVQWMHIDMAG 571
>12_02_0137 +
14153603-14153629,14154136-14154586,14155066-14155260,
14155366-14155628,14155964-14156104,14156188-14156283,
14156672-14156749,14157134-14157194,14157324-14157511,
14158441-14158569
Length = 542
Score = 114 bits (274), Expect = 9e-26
Identities = 66/160 (41%), Positives = 92/160 (57%), Gaps = 2/160 (1%)
Frame = -2
Query: 619 INVCAVIPICENMVSGQCMKVGDVVRALNGLSIQIEDTDMEGRLMLADALVYGQAVHKPE 440
+ V + CENM+SG M+ GD+V A NG +I++++TD EGRL LADALVY + +
Sbjct: 358 VEVHFISAACENMISGTGMRPGDIVTASNGKTIEVDNTDAEGRLTLADALVYACKL-GVD 416
Query: 439 LVIDVATFTRGVLQALGGAACGCYTESEALWRDVTAAGARSGDRAWRLPLWDYYRRQITD 260
+ID+AT T ALG + G T S+ L ++V AA SG++ WRLPL + Y Q+
Sbjct: 417 KIIDLATLTGYCRIALGPSIAGILTPSDELDKEVAAAYEASGEKFWRLPLEESYWEQMKS 476
Query: 259 DPSVDLRNKGSGKATSCLGAAFLKSFV--CCSWLHVDTTG 146
+ D+ N GS + FLK FV W+HVD G
Sbjct: 477 SVA-DMLNTGSPLGGAITAGLFLKQFVDEKVKWMHVDMAG 515
>09_01_0155 -
2301903-2302151,2302334-2302491,2302651-2302819,
2303796-2304839,2305792-2306075,2306318-2307333,
2307937-2308085
Length = 1022
Score = 33.1 bits (72), Expect = 0.27
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 126 PCASLPTPVVSTCSHEQHTKLFKNAAPRQEVALP 227
PC+S P +TCS + H L +A PR++ LP
Sbjct: 75 PCSSSSAP--NTCSQQSHLLLVSSAGPREQTLLP 106
>07_01_0203 + 1469575-1470045
Length = 156
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -2
Query: 394 LGGAACGCYTESEALWRDVTAAG 326
+GGA CG YT + +WRD TA G
Sbjct: 106 VGGAMCGHYT--QVVWRDTTAVG 126
>07_01_0199 - 1420982-1421452
Length = 156
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -2
Query: 394 LGGAACGCYTESEALWRDVTAAG 326
+GGA CG YT + +WRD TA G
Sbjct: 106 VGGAMCGHYT--QVVWRDTTAVG 126
>07_01_0195 - 1387831-1388301
Length = 156
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -2
Query: 394 LGGAACGCYTESEALWRDVTAAG 326
+GGA CG YT + +WRD TA G
Sbjct: 106 VGGAMCGHYT--QVVWRDTTAVG 126
>07_01_0191 - 1354678-1355148
Length = 156
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -2
Query: 394 LGGAACGCYTESEALWRDVTAAG 326
+GGA CG YT + +WRD TA G
Sbjct: 106 VGGAMCGHYT--QVVWRDTTAVG 126
>07_01_0187 - 1321525-1321995
Length = 156
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -2
Query: 394 LGGAACGCYTESEALWRDVTAAG 326
+GGA CG YT + +WRD TA G
Sbjct: 106 VGGAMCGHYT--QVVWRDTTAVG 126
>08_02_0405 +
16790720-16791691,16792064-16792135,16794487-16794621,
16794630-16794758
Length = 435
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 352 LWRDVTAAGARSGDRAWRLPLWDYYR 275
L+R V A A SGD+ WR+ W Y+
Sbjct: 198 LFRTVRVAFAASGDKQWRVSSWSMYQ 223
>08_02_0307 - 15612761-15612856,15613879-15613950,15614325-15615290
Length = 377
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 352 LWRDVTAAGARSGDRAWRLPLWDYYR 275
L R V A A SGDR WR+ W Y+
Sbjct: 196 LSRTVRVAFAASGDRQWRVSSWSMYQ 221
>11_06_0181 + 20985960-20987825,20987904-20989169
Length = 1043
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Frame = +3
Query: 339 TSRHSASLSV*QPHAAPPSACSTPLVKVATSMTSSG----LWTACPY 467
T R AS V + PP+ + + VA SMT S WT CP+
Sbjct: 128 TKRQCASREVAKEATQPPNKTDSNISNVAGSMTPSASVLVFWTICPH 174
>07_03_0604 + 19903654-19904598
Length = 314
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -1
Query: 584 HGERTVHEGR-RRRQSSQRTLHPDRRHGHGGPADAGRRSGVRAG 456
H R +H R RRR+ RRHG G GRR V AG
Sbjct: 96 HRARRLHHRRVRRRRVHVAVRSSRRRHGRRGEEGQGRRPRVPAG 139
>05_04_0345 +
20451497-20451740,20452078-20452159,20452837-20452882,
20453669-20454352
Length = 351
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +1
Query: 451 GRPARTPERRPASAGPPCPC-LRSGW 525
G P TP RRP +AG PC + + W
Sbjct: 11 GGPCLTPRRRPLAAGEAAPCSVAAAW 36
>03_05_0263 + 22503943-22506240
Length = 765
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -2
Query: 622 PINVCAVIPICENMVSGQCMKVGDVVRALNGLSIQIEDTDMEGRLMLADA 473
P V I +C+ VS + K G VVR G + + +T G ++ADA
Sbjct: 387 PEKVAGKIVVCDRGVSARVQK-GFVVRDAGGAGMVLSNTATNGEELVADA 435
>05_03_0478 - 14526180-14526578
Length = 132
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Frame = -1
Query: 608 RSHTDMREHGERTVHEGRRRRQSSQRTLHPDRRHGHGGPADA----GRRSGVRAG 456
R D +H + + G RRR RRH G A+A G + VR+G
Sbjct: 58 RQRRDEEDHRQHDGYRGARRRGQEDHRRRRPRRHAVGAAAEAINHGGSATAVRSG 112
>03_06_0449 -
34013973-34014056,34014595-34014630,34014729-34014816,
34015034-34015143,34015611-34015715,34015812-34015903,
34016145-34016232,34016407-34016526,34016603-34016721,
34017253-34018126
Length = 571
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 557 RRRRQSSQRTLHPDRRHGHGGPADAGRRSGVRAG 456
R R ++S +L RR+ GG D G++SG R G
Sbjct: 6 RIREKTSIASLLSSRRNWSGGGVDGGKKSGKREG 39
>01_06_0251 - 27885236-27885775,27887383-27887529
Length = 228
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -1
Query: 554 RRRQSSQRTLHPDRRHGHGGPADAGRRSGVRAGR 453
R R +S+ HP RR HGG + R G AGR
Sbjct: 187 RGRAASRGCRHPHRREAHGGGGTSPHRQG-PAGR 219
>05_05_0230 -
23476919-23477372,23477656-23477695,23478578-23478700,
23479114-23479151,23479289-23479674,23479875-23481053,
23481805-23481928,23482733-23482779
Length = 796
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +3
Query: 315 PERAPAAVTSRHSASLSV*QPHAAPPSACSTPLVKVATSMTSSGLWTACP 464
PER +A SR +L V PSA S P+ KV+ S ++ P
Sbjct: 347 PERPLSAGRSRPGMALGVRSTSNTEPSAASAPVKKVSVPAMSRSKFSDAP 396
>01_05_0758 +
24954701-24954793,24954907-24955086,24955676-24955870,
24955982-24956089,24956211-24956288,24956383-24956464,
24956624-24956783,24956877-24957179,24957295-24957513,
24957598-24958057,24958175-24958240,24958332-24958511
Length = 707
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 560 GRRRRQSSQRTLHPDRRHGHGGPADAGRRSGVRAG 456
G RRR SS++ + + GG G+R GVR G
Sbjct: 4 GGRRRYSSEQLMFDVPANAGGGAGKWGQRGGVRRG 38
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,707,403
Number of Sequences: 37544
Number of extensions: 304105
Number of successful extensions: 1396
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1393
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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