Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10k04
         (809 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF510719-1|AAP47148.1|  591|Anopheles gambiae ammonium transport...    26   1.2  
AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         24   4.8  

>AF510719-1|AAP47148.1|  591|Anopheles gambiae ammonium
           transport-like protein protein.
          Length = 591

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = -2

Query: 433 IDVATFTRGVLQALGGAACGCYTESEALWRDVTAAGARSGDRAWRLPLWDYYRRQITDDP 254
           +DV     G+L +L     GCY      W  +      S    + +PL+D   R   DDP
Sbjct: 297 MDVVDLINGILASLVSVTAGCYLYH--AWEAILIGAIGSALCCFGMPLFD---RMGVDDP 351


>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 345 RHSASLS-V*QPHAAPPSACSTPLVKVATSMTSSGLWTACP 464
           R+ ASLS V    A P S+CS      + S +SS   + CP
Sbjct: 219 RNGASLSPVHTAPAIPVSSCSPLSTASSASCSSSAAGSLCP 259


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 579,713
Number of Sequences: 2352
Number of extensions: 9244
Number of successful extensions: 26
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 85655418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)