Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10k04
(809 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L15313-6|AAA28198.1| 491|Caenorhabditis elegans Leucine aminope... 80 2e-15
Z78018-4|CAB01448.1| 522|Caenorhabditis elegans Hypothetical pr... 36 0.045
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 34 0.14
Z22181-3|CAA80181.3| 416|Caenorhabditis elegans Hypothetical pr... 32 0.56
AL032655-2|CAB60457.1| 561|Caenorhabditis elegans Hypothetical ... 30 2.3
AF106592-4|AAK21366.1| 786|Caenorhabditis elegans Hypothetical ... 29 3.0
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 28 6.9
AL132898-18|CAC14411.2| 417|Caenorhabditis elegans Hypothetical... 28 9.1
>L15313-6|AAA28198.1| 491|Caenorhabditis elegans Leucine
aminopeptidase protein 1 protein.
Length = 491
Score = 79.8 bits (188), Expect = 2e-15
Identities = 68/245 (27%), Positives = 103/245 (42%), Gaps = 12/245 (4%)
Frame = -2
Query: 802 VITEETRNXGPPVVIAAKGVTFDSGGLCLKKRESMVENRGSMXXXXXXXXXXXXXXXLQV 623
V++ E + + KGV +D+GGL +K + M + M
Sbjct: 235 VLSHEVPGSTEHIALVGKGVVYDTGGLQIKTKTGMPNMKRDMGGAAGMLEAYSALVKHGF 294
Query: 622 PINVCAVIPICENMVSGQCMKVGDVVRALNGLSIQIEDTDMEGRLMLADALVYGQAVHKP 443
+ A + I EN VS K D+++ L+G +++I +TD EGRL+LAD + Y + K
Sbjct: 295 SQTLHACLCIVENNVSPIANKPDDIIKMLSGKTVEINNTDAEGRLILADGVFYAKETLKA 354
Query: 442 ELVIDVATFTRGVLQALGGAACG-CYTESEALWRDVTAAGARSGDR-AWRLPLWDYYRRQ 269
+ D+AT T G L G G T E L ++ AG SGD A L D +
Sbjct: 355 TTIFDMATLT-GAQAWLSGRLHGAAMTNDEQLENEIIKAGKASGDLVAPMLFAPDLFFGD 413
Query: 268 ITDDPSVDLRNKGSGK---ATSCLGAAFLKSFV----CCSWLHVDTTG---VGKLAHGSA 119
+ D++N GK S + F+ + + WLH+D VG G
Sbjct: 414 LKSS-IADMKNSNLGKMDGPPSAVAGLFIGAHIGFGEGLRWLHLDIAAPAEVGDRGTGYG 472
Query: 118 PPYLS 104
P S
Sbjct: 473 PALFS 477
>Z78018-4|CAB01448.1| 522|Caenorhabditis elegans Hypothetical
protein W07G4.4 protein.
Length = 522
Score = 35.5 bits (78), Expect = 0.045
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
Frame = -2
Query: 760 IAAKGVTFDSGGLCLKKRESMVENRGSMXXXXXXXXXXXXXXXLQVPINVCAVIPIC--E 587
+ KGVT D+GG LK M L+ P N+ AV +C
Sbjct: 268 VVGKGVTIDTGGCDLKTGGHMFGMCRDKYGSAVVGGFFKAIDVLK-PKNIKAVGYMCMVR 326
Query: 586 NMVSGQCMKVGDVVRALNGLSIQIEDTDMEGRLMLADAL 470
N + +V+ + +G I I +TD EGRL + D L
Sbjct: 327 NSIGSHAYTCDEVITSRSGKRIHIYNTDAEGRLTMLDPL 365
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 33.9 bits (74), Expect = 0.14
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = -1
Query: 587 EHGERTVHEGRRRRQSSQ---RTLHPDRRHGHGGPADAGRRSGVRAGR 453
EH R+ G RR + R+ P RHGHGG G RSG GR
Sbjct: 224 EHRGRSGSPGGRRGHGGRHGSRSGSPGGRHGHGGHGGHGSRSGSPGGR 271
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/38 (44%), Positives = 18/38 (47%)
Frame = -1
Query: 566 HEGRRRRQSSQRTLHPDRRHGHGGPADAGRRSGVRAGR 453
H G R S + P RHGHGG G RSG GR
Sbjct: 285 HGGHGRHGSCSGS--PRGRHGHGGHGGHGSRSGSPGGR 320
>Z22181-3|CAA80181.3| 416|Caenorhabditis elegans Hypothetical
protein ZK632.4 protein.
Length = 416
Score = 31.9 bits (69), Expect = 0.56
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -2
Query: 550 VVRALNGLSIQIEDTDMEGRLMLA-DALVYGQAVHKPELVIDVATF 416
V+ L LSIQI T +G+L+ A D Y HKPE+ I + F
Sbjct: 89 VLSVLGPLSIQIHPTKEQGKLLHATDPKNYPDDNHKPEIAIALTEF 134
>AL032655-2|CAB60457.1| 561|Caenorhabditis elegans Hypothetical
protein Y6B3B.4 protein.
Length = 561
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -1
Query: 584 HGERTVHEGRRRRQSSQRTLHPDRRHGHGGPADAGRR 474
H + VHE + ++ L P RR GH D G+R
Sbjct: 179 HHHQNVHEPGTHVERHEKMLSPSRRRGHKDDDDFGKR 215
>AF106592-4|AAK21366.1| 786|Caenorhabditis elegans Hypothetical
protein D1037.1 protein.
Length = 786
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/54 (37%), Positives = 25/54 (46%)
Frame = -1
Query: 608 RSHTDMREHGERTVHEGRRRRQSSQRTLHPDRRHGHGGPADAGRRSGVRAGRPQ 447
RSH+ G RT E RRR +S R H RR P + R + R RP+
Sbjct: 248 RSHSSSDRRGRRTSKESRRRSRS--RDTHRTRRR---SPERSRRSTETRNERPE 296
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/36 (33%), Positives = 13/36 (36%)
Frame = -1
Query: 587 EHGERTVHEGRRRRQSSQRTLHPDRRHGHGGPADAG 480
EHG H G + H HGH PA G
Sbjct: 421 EHGTHHGHHGEHHHAPAHHGHHESHGHGHHSPAHHG 456
>AL132898-18|CAC14411.2| 417|Caenorhabditis elegans Hypothetical
protein Y59A8B.13 protein.
Length = 417
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -1
Query: 614 CLRSHTDMREHGER-TVHEGRRRRQSSQRTLHPDRRHGHGGPADAGRR 474
C + + R + E +H R QSSQ TLH + H A+ G R
Sbjct: 66 CRKELSSKRSYTEHMNIHNKSRPFQSSQMTLHRHKLRNHTPKAEWGYR 113
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,650,810
Number of Sequences: 27780
Number of extensions: 207202
Number of successful extensions: 830
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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