Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10k03
(873 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY258907-1|AAP13531.1| 179|Homo sapiens transcription factor NF... 33 1.8
AK126872-1|BAC86731.1| 487|Homo sapiens protein ( Homo sapiens ... 31 5.5
DQ335469-1|ABC59821.1| 5005|Homo sapiens fragile site-associated... 30 9.5
BC139782-1|AAI39783.1| 526|Homo sapiens XIRP1 protein protein. 30 9.5
BC127119-1|AAI27120.1| 526|Homo sapiens XIRP1 protein protein. 30 9.5
AY515706-1|AAR99656.1| 668|Homo sapiens bestrophin 3 protein. 30 9.5
AY375160-1|AAQ64003.1| 1843|Homo sapiens cardiomyopathy associat... 30 9.5
AL713648-1|CAD28459.1| 1059|Homo sapiens hypothetical protein pr... 30 9.5
AK126299-1|BAC86519.1| 1358|Homo sapiens protein ( Homo sapiens ... 30 9.5
AK096459-1|BAC04797.1| 668|Homo sapiens protein ( Homo sapiens ... 30 9.5
AK096421-1|BAC04783.1| 526|Homo sapiens protein ( Homo sapiens ... 30 9.5
AJ626900-1|CAF25192.1| 1843|Homo sapiens Xin A protein. 30 9.5
AF440758-1|AAM76997.1| 398|Homo sapiens vitelliform macular dys... 30 9.5
>AY258907-1|AAP13531.1| 179|Homo sapiens transcription factor NF-E4
protein.
Length = 179
Score = 32.7 bits (71), Expect = 1.8
Identities = 13/36 (36%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Frame = -1
Query: 744 YCTQTHPPLQRTSPLPIKPDMDMD-TPEKKPAMHRS 640
+ +Q++PP + +S LP+K D ++ TP++ P++H S
Sbjct: 142 FLSQSNPPTRISSALPLKTDSALEQTPQQLPSLHLS 177
>AK126872-1|BAC86731.1| 487|Homo sapiens protein ( Homo sapiens
cDNA FLJ44924 fis, clone BRAMY3014555. ).
Length = 487
Score = 31.1 bits (67), Expect = 5.5
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -1
Query: 738 TQTHPPLQRTSPLPIKPDMDMDTPEKKPAMHRSWQLMTELVQILQLSVTAT 586
T THPP + LP+ ++ + TP + A H +T VQ L L +T T
Sbjct: 235 TPTHPPKKVVPQLPVYQEVTIPTPGQDQAQHPMSPSIT--VQPLDLGLTIT 283
>DQ335469-1|ABC59821.1| 5005|Homo sapiens fragile site-associated
protein protein.
Length = 5005
Score = 30.3 bits (65), Expect = 9.5
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = -1
Query: 729 HPPLQRTSPLPIKPDMDMDTPEKKPAMHRSWQLMTELVQILQLSVTATAL 580
HP +RTS + +D+DTP + + QL ++++ +TA +L
Sbjct: 1519 HPTNKRTSKSSLHRPLDLDTPTSEESSSSFEQLSVPTFKVIKQGLTANSL 1568
>BC139782-1|AAI39783.1| 526|Homo sapiens XIRP1 protein protein.
Length = 526
Score = 30.3 bits (65), Expect = 9.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 747 AYCTQTHPPLQRTSPLPIKPDMDMDTPEKK 658
A+ TQ+HPP + PLP+ P + +++
Sbjct: 14 AHLTQSHPPQRLPKPLPLSPSFSSEVGQRE 43
>BC127119-1|AAI27120.1| 526|Homo sapiens XIRP1 protein protein.
Length = 526
Score = 30.3 bits (65), Expect = 9.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 747 AYCTQTHPPLQRTSPLPIKPDMDMDTPEKK 658
A+ TQ+HPP + PLP+ P + +++
Sbjct: 14 AHLTQSHPPQRLPKPLPLSPSFSSEVGQRE 43
>AY515706-1|AAR99656.1| 668|Homo sapiens bestrophin 3 protein.
Length = 668
Score = 30.3 bits (65), Expect = 9.5
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Frame = -3
Query: 574 LLCYLLLYAINILYFEKRTVFP*R*WSHEGYNSSCDFYIT---SRWFQSDYSNGETDRNI 404
L+ LLL + YFEK +++ R FY+T +RW+ + DR +
Sbjct: 48 LVYRLLLTGVQKRYFEKLSIYCDRYAEQIPVTFVLGFYVTLVVNRWWNQFVNLPWPDR-L 106
Query: 403 VMKINTTLH-SNKRNYMNCGMLYRYLGKIRGLMFRYVSLFIMK 278
+ I++++H S++ + L RY+ L+FR VS + K
Sbjct: 107 MFLISSSVHGSDEHGRLLRRTLMRYVNLTSLLIFRSVSTAVYK 149
>AY375160-1|AAQ64003.1| 1843|Homo sapiens cardiomyopathy associated
protein 1 protein.
Length = 1843
Score = 30.3 bits (65), Expect = 9.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 747 AYCTQTHPPLQRTSPLPIKPDMDMDTPEKK 658
A+ TQ+HPP + PLP+ P + +++
Sbjct: 1331 AHLTQSHPPQRLPKPLPLSPSFSSEVGQRE 1360
>AL713648-1|CAD28459.1| 1059|Homo sapiens hypothetical protein
protein.
Length = 1059
Score = 30.3 bits (65), Expect = 9.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 747 AYCTQTHPPLQRTSPLPIKPDMDMDTPEKK 658
A+ TQ+HPP + PLP+ P + +++
Sbjct: 767 AHLTQSHPPQRLPKPLPLSPSFSSEVGQRE 796
>AK126299-1|BAC86519.1| 1358|Homo sapiens protein ( Homo sapiens
cDNA FLJ44319 fis, clone TRACH3000926, moderately
similar to Mus musculus cardiac morphogenesis (Xin). ).
Length = 1358
Score = 30.3 bits (65), Expect = 9.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 747 AYCTQTHPPLQRTSPLPIKPDMDMDTPEKK 658
A+ TQ+HPP + PLP+ P + +++
Sbjct: 846 AHLTQSHPPQRLPKPLPLSPSFSSEVGQRE 875
>AK096459-1|BAC04797.1| 668|Homo sapiens protein ( Homo sapiens
cDNA FLJ39140 fis, clone NTONG2009233, moderately
similar to BESTROPHIN. ).
Length = 668
Score = 30.3 bits (65), Expect = 9.5
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Frame = -3
Query: 574 LLCYLLLYAINILYFEKRTVFP*R*WSHEGYNSSCDFYIT---SRWFQSDYSNGETDRNI 404
L+ LLL + YFEK +++ R FY+T +RW+ + DR +
Sbjct: 48 LVYRLLLTGVQKRYFEKLSIYCDRYAEQIPVTFVLGFYVTLVVNRWWNQFVNLPWPDR-L 106
Query: 403 VMKINTTLH-SNKRNYMNCGMLYRYLGKIRGLMFRYVSLFIMK 278
+ I++++H S++ + L RY+ L+FR VS + K
Sbjct: 107 MFLISSSVHGSDEHGRLLRRTLMRYVNLTSLLIFRSVSTAVYK 149
>AK096421-1|BAC04783.1| 526|Homo sapiens protein ( Homo sapiens
cDNA FLJ39102 fis, clone NTONG2002948, moderately
similar to Mus musculus Xin mRNA. ).
Length = 526
Score = 30.3 bits (65), Expect = 9.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 747 AYCTQTHPPLQRTSPLPIKPDMDMDTPEKK 658
A+ TQ+HPP + PLP+ P + +++
Sbjct: 14 AHLTQSHPPQRLPKPLPLSPSFSSEVGQRE 43
>AJ626900-1|CAF25192.1| 1843|Homo sapiens Xin A protein.
Length = 1843
Score = 30.3 bits (65), Expect = 9.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 747 AYCTQTHPPLQRTSPLPIKPDMDMDTPEKK 658
A+ TQ+HPP + PLP+ P + +++
Sbjct: 1331 AHLTQSHPPQRLPKPLPLSPSFSSEVGQRE 1360
>AF440758-1|AAM76997.1| 398|Homo sapiens vitelliform macular
dystrophy 2-like protein 3 protein.
Length = 398
Score = 30.3 bits (65), Expect = 9.5
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Frame = -3
Query: 574 LLCYLLLYAINILYFEKRTVFP*R*WSHEGYNSSCDFYIT---SRWFQSDYSNGETDRNI 404
L+ LLL + YFEK +++ R FY+T +RW+ + DR +
Sbjct: 48 LVYRLLLTGVQKRYFEKLSIYCDRYAEQIPVTFVLGFYVTLVVNRWWNQFVNLPWPDR-L 106
Query: 403 VMKINTTLH-SNKRNYMNCGMLYRYLGKIRGLMFRYVSLFIMK 278
+ I++++H S++ + L RY+ L+FR VS + K
Sbjct: 107 MFLISSSVHGSDEHGRLLRRTLMRYVNLTSLLIFRSVSTAVYK 149
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,316,649
Number of Sequences: 237096
Number of extensions: 2320443
Number of successful extensions: 7656
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7656
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11104084400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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