Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10k03
(873 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z36752-5|CAA85328.2| 533|Caenorhabditis elegans Hypothetical pr... 31 1.1
AF499444-1|AAM27195.1| 945|Caenorhabditis elegans poly ADP-ribo... 31 1.1
AC024200-15|AAF36011.1| 945|Caenorhabditis elegans Poly(adp-rib... 31 1.1
AF043706-5|ABP57808.1| 536|Caenorhabditis elegans Hypothetical ... 31 1.4
AF043706-3|ABP57807.1| 534|Caenorhabditis elegans Hypothetical ... 31 1.4
Z81132-4|CAB03440.1| 339|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical pr... 29 5.7
Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical pr... 28 7.6
U53151-4|AAB37066.1| 335|Caenorhabditis elegans Hypothetical pr... 28 7.6
>Z36752-5|CAA85328.2| 533|Caenorhabditis elegans Hypothetical
protein F35H8.6 protein.
Length = 533
Score = 31.1 bits (67), Expect = 1.1
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 618 VQILQLSVTATALAFYYVIYCYMQLIYYTLRS 523
+ LQ + F++VI+C + +IYYT+R+
Sbjct: 476 LNFLQYFLVDVIAFFFFVIFCTLSIIYYTIRT 507
>AF499444-1|AAM27195.1| 945|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-1 protein.
Length = 945
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +1
Query: 325 CPNICIACHNS---YSSAC*NEVLY*FSSQYSDQSLHSNNQIET 447
CP IC C N Y+S+C V ++++YS + S N I T
Sbjct: 325 CPIICQTCSNGKIVYNSSCRTYVCTGYATEYSKCTYESKNPIRT 368
>AC024200-15|AAF36011.1| 945|Caenorhabditis elegans
Poly(adp-ribose) metabolism enzymeprotein 1 protein.
Length = 945
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +1
Query: 325 CPNICIACHNS---YSSAC*NEVLY*FSSQYSDQSLHSNNQIET 447
CP IC C N Y+S+C V ++++YS + S N I T
Sbjct: 325 CPIICQTCSNGKIVYNSSCRTYVCTGYATEYSKCTYESKNPIRT 368
>AF043706-5|ABP57808.1| 536|Caenorhabditis elegans Hypothetical
protein ZC123.4b protein.
Length = 536
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -2
Query: 365 ELYELWHAIQIFGQDSGSNVPLRVVVHNESVFEFISSECK 246
E+ + WH+ + G SGS HN+++F F+S + +
Sbjct: 108 EMTQSWHSNHVNGASSGSGSGSTPEHHNKNIFSFLSRQSR 147
>AF043706-3|ABP57807.1| 534|Caenorhabditis elegans Hypothetical
protein ZC123.4a protein.
Length = 534
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -2
Query: 365 ELYELWHAIQIFGQDSGSNVPLRVVVHNESVFEFISSECK 246
E+ + WH+ + G SGS HN+++F F+S + +
Sbjct: 108 EMTQSWHSNHVNGASSGSGSGSTPEHHNKNIFSFLSRQSR 147
>Z81132-4|CAB03440.1| 339|Caenorhabditis elegans Hypothetical
protein T26E4.5 protein.
Length = 339
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +3
Query: 507 YGNTVRFSKYSILIAYSNR*HSKTREPSPLQIT-AKFVPALSLIAKTCASPVSSLVYPYP 683
+GN V F+K N H + R P+P T K P S+I ++P + L +
Sbjct: 212 FGNDVNFAKAVFEDRIFNSSHLQDRTPTPPNYTIPKISPEYSVILPQNSTPENDLAFSRQ 271
Query: 684 -YQVLLAT 704
Y V+L T
Sbjct: 272 FYDVMLIT 279
>Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical protein
F57C7.1a protein.
Length = 1209
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 726 PPLQRTSPLPIKPDMDMDTPEKKPAM 649
P ++ +PL I ++ DTPEKKP M
Sbjct: 1106 PQQKKKAPLSILDELLPDTPEKKPVM 1131
>Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical protein
T08G11.1b protein.
Length = 3185
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -1
Query: 771 GFENTCISAYCTQTHPPLQRTSPLPIKPDMDMDTPEKK 658
G ++ S Y HPPL+ + LP D++++ PE+K
Sbjct: 2119 GIDDQTTSIYHVHLHPPLEFHNNLPF--DINIELPEQK 2154
>Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical protein
T08G11.1a protein.
Length = 3212
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -1
Query: 771 GFENTCISAYCTQTHPPLQRTSPLPIKPDMDMDTPEKK 658
G ++ S Y HPPL+ + LP D++++ PE+K
Sbjct: 2119 GIDDQTTSIYHVHLHPPLEFHNNLPF--DINIELPEQK 2154
>U53151-4|AAB37066.1| 335|Caenorhabditis elegans Hypothetical
protein T05B11.1 protein.
Length = 335
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 682 HIRFYWQRARTLQGRMCLRTISGNTCVFEPSIL 780
HIR W + L RM ++ + + C F PS++
Sbjct: 159 HIRLSWTQFMDLLSRMTIKHLYIDFCTFHPSLI 191
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,289,499
Number of Sequences: 27780
Number of extensions: 382750
Number of successful extensions: 961
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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