Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10k03
(873 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex det... 24 1.6
DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex det... 24 1.6
DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex det... 24 1.6
DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex det... 24 1.6
DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex det... 24 1.6
DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex det... 24 1.6
DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex det... 24 1.6
DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex det... 24 1.6
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 24 2.1
DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex det... 23 2.8
DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex det... 23 2.8
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 23 2.8
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 23 3.7
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 22 6.4
AF213012-1|AAG43568.1| 492|Apis mellifera acetylcholinesterase ... 22 6.4
AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase ... 22 6.4
>DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 24.2 bits (50), Expect = 1.6
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = +2
Query: 41 DFSKAHKNNNFNKIIKMYFN 100
+++ + NNN+N K+Y+N
Sbjct: 93 NYNNYNNNNNYNNYKKLYYN 112
>DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 24.2 bits (50), Expect = 1.6
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = +2
Query: 41 DFSKAHKNNNFNKIIKMYFN 100
+++ + NNN+N K+Y+N
Sbjct: 93 NYNNYNNNNNYNNYKKLYYN 112
>DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 24.2 bits (50), Expect = 1.6
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = +2
Query: 41 DFSKAHKNNNFNKIIKMYFN 100
+++ + NNN+N K+Y+N
Sbjct: 93 NYNNYNNNNNYNNYKKLYYN 112
>DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 24.2 bits (50), Expect = 1.6
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = +2
Query: 41 DFSKAHKNNNFNKIIKMYFN 100
+++ + NNN+N K+Y+N
Sbjct: 93 NYNNYNNNNNYNNYKKLYYN 112
>DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 24.2 bits (50), Expect = 1.6
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = +2
Query: 41 DFSKAHKNNNFNKIIKMYFN 100
+++ + NNN+N K+Y+N
Sbjct: 93 NYNNYNNNNNYNNYKKLYYN 112
>DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 24.2 bits (50), Expect = 1.6
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = +2
Query: 41 DFSKAHKNNNFNKIIKMYFN 100
+++ + NNN+N K+Y+N
Sbjct: 93 NYNNYNNNNNYNNYKKLYYN 112
>DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 24.2 bits (50), Expect = 1.6
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = +2
Query: 41 DFSKAHKNNNFNKIIKMYFN 100
+++ + NNN+N K+Y+N
Sbjct: 93 NYNNYNNNNNYNNYKKLYYN 112
>DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 24.2 bits (50), Expect = 1.6
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = +2
Query: 41 DFSKAHKNNNFNKIIKMYFN 100
+++ + NNN+N K+Y+N
Sbjct: 93 NYNNYNNNNNYNNYKKLYYN 112
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 23.8 bits (49), Expect = 2.1
Identities = 8/22 (36%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +2
Query: 56 HKNNNFNKIIK-MYFNNLVLNL 118
+ NNN+N K +Y+ N ++N+
Sbjct: 333 YNNNNYNNYNKKLYYKNYIINI 354
>DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 2.8
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 56 HKNNNFNKIIKMYFN 100
+ NNN+N K+Y+N
Sbjct: 96 YNNNNYNNYKKLYYN 110
>DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex
determiner protein.
Length = 191
Score = 23.4 bits (48), Expect = 2.8
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 56 HKNNNFNKIIKMYFN 100
+ NNN+N K+Y+N
Sbjct: 106 YNNNNYNNYKKLYYN 120
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 23.4 bits (48), Expect = 2.8
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 56 HKNNNFNKIIKMYFN 100
+ NNN+N K+Y+N
Sbjct: 341 YNNNNYNNYKKLYYN 355
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 23.0 bits (47), Expect = 3.7
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -3
Query: 814 SCTASSYACCNPKYWVRKHMYFRL 743
+CT + AC +P + H +RL
Sbjct: 314 ACTCKAVACLDPYVYAISHPKYRL 337
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 22.2 bits (45), Expect = 6.4
Identities = 14/58 (24%), Positives = 25/58 (43%)
Frame = +3
Query: 498 HQRYGNTVRFSKYSILIAYSNR*HSKTREPSPLQITAKFVPALSLIAKTCASPVSSLV 671
H + N +++YS+++ N+ S Q TA+ VP TC + S +
Sbjct: 1041 HLQIMNLKTYTQYSVVVQAFNKVGSGPMSEERRQHTAEGVPEQPPHDTTCTTLTSQTI 1098
>AF213012-1|AAG43568.1| 492|Apis mellifera acetylcholinesterase
protein.
Length = 492
Score = 22.2 bits (45), Expect = 6.4
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 71 FNKIIKMYFNNLVLNLM*TRY-VFGFLFFHKHQT 169
+N I +N+++ M R FGFL+ +KH T
Sbjct: 179 YNADIMAATSNVIIASMQYRVGAFGFLYLNKHFT 212
>AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase
protein.
Length = 628
Score = 22.2 bits (45), Expect = 6.4
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 71 FNKIIKMYFNNLVLNLM*TRY-VFGFLFFHKHQT 169
+N I +N+++ M R FGFL+ +KH T
Sbjct: 179 YNADIMAATSNVIIASMQYRVGAFGFLYLNKHFT 212
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,987
Number of Sequences: 438
Number of extensions: 4883
Number of successful extensions: 18
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -