Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10k02
         (794 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT004846-1|AAO45202.1|  769|Drosophila melanogaster RE70136p pro...    30   4.2  
AF106952-1|AAD19607.1|  769|Drosophila melanogaster serine/threo...    30   4.2  
AE014296-3553|AAF51737.1|  769|Drosophila melanogaster CG7186-PA...    30   4.2  
AF242296-1|AAF59842.1| 1619|Drosophila melanogaster mechanosenso...    29   9.7  
AE014134-916|AAF52248.3| 1619|Drosophila melanogaster CG11020-PA...    29   9.7  
AE014134-915|AAS64642.1| 1712|Drosophila melanogaster CG11020-PB...    29   9.7  

>BT004846-1|AAO45202.1|  769|Drosophila melanogaster RE70136p
           protein.
          Length = 769

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 382 LRSGTSEFESLKFRVEYNKHEIEI*CKIYNKFMKFILLYP 263
           LR+G    E LKFR  YN+  I   C+I +   + I+  P
Sbjct: 409 LRNGEVVLEFLKFRPTYNEDRINDICRISDDGQRIIIYQP 448


>AF106952-1|AAD19607.1|  769|Drosophila melanogaster
           serine/threonine kinase protein.
          Length = 769

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 382 LRSGTSEFESLKFRVEYNKHEIEI*CKIYNKFMKFILLYP 263
           LR+G    E LKFR  YN+  I   C+I +   + I+  P
Sbjct: 409 LRNGEVVLEFLKFRPTYNEDRINDICRISDDGQRIIIYQP 448


>AE014296-3553|AAF51737.1|  769|Drosophila melanogaster CG7186-PA
           protein.
          Length = 769

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 382 LRSGTSEFESLKFRVEYNKHEIEI*CKIYNKFMKFILLYP 263
           LR+G    E LKFR  YN+  I   C+I +   + I+  P
Sbjct: 409 LRNGEVVLEFLKFRPTYNEDRINDICRISDDGQRIIIYQP 448


>AF242296-1|AAF59842.1| 1619|Drosophila melanogaster mechanosensory
           transduction channelNOMPC protein.
          Length = 1619

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 509 TFLEVAVVFCAESGHKIYRFNVIHNINPTHLTSHMN 402
           T LE A  +CA +G+      +I ++NPT +   MN
Sbjct: 619 TALETAFHYCAVAGNNDVLMEMISHMNPTDIQKAMN 654


>AE014134-916|AAF52248.3| 1619|Drosophila melanogaster CG11020-PA,
           isoform A protein.
          Length = 1619

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 509 TFLEVAVVFCAESGHKIYRFNVIHNINPTHLTSHMN 402
           T LE A  +CA +G+      +I ++NPT +   MN
Sbjct: 619 TALETAFHYCAVAGNNDVLMEMISHMNPTDIQKAMN 654


>AE014134-915|AAS64642.1| 1712|Drosophila melanogaster CG11020-PB,
           isoform B protein.
          Length = 1712

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 509 TFLEVAVVFCAESGHKIYRFNVIHNINPTHLTSHMN 402
           T LE A  +CA +G+      +I ++NPT +   MN
Sbjct: 619 TALETAFHYCAVAGNNDVLMEMISHMNPTDIQKAMN 654


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,333,187
Number of Sequences: 53049
Number of extensions: 553987
Number of successful extensions: 833
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3695805360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)