Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10k02
         (794 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78417-12|CAO78731.1|  318|Caenorhabditis elegans Hypothetical p...    30   2.2  
Z78417-11|CAE17739.1|  294|Caenorhabditis elegans Hypothetical p...    30   2.2  
Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr...    30   2.2  

>Z78417-12|CAO78731.1|  318|Caenorhabditis elegans Hypothetical
           protein C35C5.10b protein.
          Length = 318

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = -1

Query: 527 RSLAKITFLEV-AVVFCAESGHKIYRFNVIHNINPTHLTSHMNLMIKSL 384
           R++++   L V +++F AE  +K+     I  +NP H+T+ M LM+ ++
Sbjct: 88  RNVSRYVILTVYSLIFGAELAYKMISRTGIFLLNPCHVTTTMQLMLLTM 136


>Z78417-11|CAE17739.1|  294|Caenorhabditis elegans Hypothetical
           protein C35C5.10a protein.
          Length = 294

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = -1

Query: 527 RSLAKITFLEV-AVVFCAESGHKIYRFNVIHNINPTHLTSHMNLMIKSL 384
           R++++   L V +++F AE  +K+     I  +NP H+T+ M LM+ ++
Sbjct: 64  RNVSRYVILTVYSLIFGAELAYKMISRTGIFLLNPCHVTTTMQLMLLTM 112


>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical
           protein F18C12.1 protein.
          Length = 4171

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
 Frame = -1

Query: 530 VRSLAKITF-LEVAVVFCAESGHKIYRFNVI--------HNINPTHLTSHMNLMIKSLFA 378
           VR L  + F +   ++ CA +G K YRF VI        + I+   + S  +LM++   A
Sbjct: 546 VRQLISLGFNIPSKIMSCANNGEKYYRFGVILKQIAHFYNTIDQQMIPSQQSLMLEEAIA 605

Query: 377 FGNLRI 360
           F  L I
Sbjct: 606 FEKLVI 611


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,399,964
Number of Sequences: 27780
Number of extensions: 316150
Number of successful extensions: 643
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)