Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10j24
         (563 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0465 + 17827224-17827997,17828711-17829024,17829949-178303...    28   5.9  
06_03_0655 + 23176075-23176470,23176573-23176710,23177506-231775...    27   7.8  
05_04_0286 + 19833114-19834053,19834149-19834165                       27   7.8  

>09_04_0465 +
           17827224-17827997,17828711-17829024,17829949-17830397,
           17830641-17830756
          Length = 550

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 9/50 (18%)
 Frame = -3

Query: 288 SLPHTALTL------RHDAAQTHLAR--PPLTTQRRPAPQ-DIPAHDSVK 166
           SLPHT+L+L       H  A T L R  PPL   + P P+ D PA    K
Sbjct: 33  SLPHTSLSLSSHHHHHHRLAPTPLRRRIPPLLASQTPNPEADSPAPAGTK 82


>06_03_0655 +
           23176075-23176470,23176573-23176710,23177506-23177574,
           23177652-23177723,23177973-23178055,23178135-23178266,
           23178407-23178617,23179233-23179262
          Length = 376

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -1

Query: 476 KYLISKHCANYQ---YIPKINILTKY*VRFGAQNFNNVHG 366
           KYLI K  ANY+   Y P + +  K     G+  FNNV G
Sbjct: 214 KYLILKRTANYEIRSYPPFLIVEAKGDKLTGSSGFNNVTG 253


>05_04_0286 + 19833114-19834053,19834149-19834165
          Length = 318

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 254 SCRRVSAVCGSDGQTYRSLC 313
           +CR    VCG DG ++  LC
Sbjct: 254 ACRATGGVCGHDGDSHGDLC 273


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,519,133
Number of Sequences: 37544
Number of extensions: 228908
Number of successful extensions: 482
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)