Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10j24
(563 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 35 0.035
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 35 0.035
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr... 31 0.76
U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1 prepropro... 29 1.7
AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical... 29 1.7
AF016447-13|AAG24017.1| 334|Caenorhabditis elegans Serpentine r... 29 2.3
L21758-1|AAA16827.1| 264|Caenorhabditis elegans osteonectin pro... 28 4.0
AF036692-3|AAB88325.1| 264|Caenorhabditis elegans Osteonectin (... 28 4.0
Z81529-11|CAB04297.1| 249|Caenorhabditis elegans Hypothetical p... 27 9.3
Z81529-8|CAB04291.1| 249|Caenorhabditis elegans Hypothetical pr... 27 9.3
U64859-9|AAC69090.1| 378|Caenorhabditis elegans Activated in bl... 27 9.3
U64859-8|AAC69096.1| 378|Caenorhabditis elegans Prion-like-(q/n... 27 9.3
AC024877-7|AAF60907.3| 438|Caenorhabditis elegans Hypothetical ... 27 9.3
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 35.1 bits (77), Expect = 0.035
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 275 VCGSDGQTYRSLCKLRRQACRKPAKHLVVDYH 370
VCGSDG+TY + C+L+ AC K++ V Y+
Sbjct: 475 VCGSDGKTYSNECRLQNAAC-MAQKNIFVKYN 505
Score = 34.3 bits (75), Expect = 0.061
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +2
Query: 275 VCGSDGQTYRSLCKLRRQAC 334
VCGSDG TY +LC+L+ AC
Sbjct: 880 VCGSDGTTYSNLCELKMFAC 899
Score = 33.5 bits (73), Expect = 0.11
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 275 VCGSDGQTYRSLCKLRRQACRKPAKHLVVDYHG 373
VCG+DG TY S C +++ AC + +K ++ + G
Sbjct: 551 VCGTDGVTYSSECHMKKSACHQ-SKFVMTAFEG 582
Score = 31.9 bits (69), Expect = 0.33
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 257 CRRVSA-VCGSDGQTYRSLCKLRRQACRKPAKHLV 358
C SA VCG+DG+TY + C L+ AC++ LV
Sbjct: 323 CTMNSAHVCGTDGKTYLNECFLKLAACKEQKDILV 357
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 269 SAVCGSDGQTYRSLCKLRRQACRKPAKHLVVDYHG 373
S VC S G Y+S C LR AC ++ V + G
Sbjct: 258 SPVCSSHGVDYQSSCHLRHHACESKT-NITVKFFG 291
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 251 ASCRRVS-AVCGSDGQTYRSLCKLRRQAC 334
A CR V+ VCGSD +Y S C L ++C
Sbjct: 167 ARCRVVTDVVCGSDHVSYSSFCHLSVRSC 195
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 275 VCGSDGQTYRSLCKLRRQACRKPA 346
+CG +G Y SLC L+ +C+K A
Sbjct: 619 ICGENGVLYPSLCHLQLASCQKGA 642
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 275 VCGSDGQTYRSLCKLRRQACRKPAKHLVVDYHGHY 379
+CGSDG Y + C L +CR + V+ H+
Sbjct: 694 ICGSDGIVYNNQCHLNTISCRDQREIHVLPLISHW 728
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 35.1 bits (77), Expect = 0.035
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 275 VCGSDGQTYRSLCKLRRQACRKPAKHLVVDYH 370
VCGSDG+TY + C+L+ AC K++ V Y+
Sbjct: 483 VCGSDGKTYSNECRLQNAAC-MAQKNIFVKYN 513
Score = 35.1 bits (77), Expect = 0.035
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +2
Query: 275 VCGSDGQTYRSLCKLRRQACR 337
VCGSDG TY +LC+L+ AC+
Sbjct: 819 VCGSDGTTYSNLCELKMFACK 839
Score = 33.5 bits (73), Expect = 0.11
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 275 VCGSDGQTYRSLCKLRRQACRKPAKHLVVDYHG 373
VCG+DG TY S C +++ AC + +K ++ + G
Sbjct: 559 VCGTDGVTYSSECHMKKSACHQ-SKFVMTAFEG 590
Score = 31.9 bits (69), Expect = 0.33
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 257 CRRVSA-VCGSDGQTYRSLCKLRRQACRKPAKHLV 358
C SA VCG+DG+TY + C L+ AC++ LV
Sbjct: 331 CTMNSAHVCGTDGKTYLNECFLKLAACKEQKDILV 365
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 269 SAVCGSDGQTYRSLCKLRRQACRKPAKHLVVDYHG 373
S VC S G Y+S C LR AC ++ V + G
Sbjct: 266 SPVCSSHGVDYQSSCHLRHHACESKT-NITVKFFG 299
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 251 ASCRRVS-AVCGSDGQTYRSLCKLRRQAC 334
A CR V+ VCGSD +Y S C L ++C
Sbjct: 175 ARCRVVTDVVCGSDHVSYSSFCHLSVRSC 203
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 275 VCGSDGQTYRSLCKLRRQACRKPA 346
+CG +G Y SLC L+ +C+K A
Sbjct: 627 ICGENGVLYPSLCHLQLASCQKGA 650
>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
protein F29G6.1 protein.
Length = 1170
Score = 30.7 bits (66), Expect = 0.76
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 275 VCGSDGQTYRSLCKLRRQAC 334
+C SD TY +LC+ R+Q C
Sbjct: 597 ICASDFSTYENLCQFRKQKC 616
Score = 29.5 bits (63), Expect = 1.7
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 275 VCGSDGQTYRSLCKLRRQACRKPAKHLVVDYHG 373
+CG++G T+ + C L+++ C + V Y G
Sbjct: 779 LCGTNGVTFTNACSLQKEICESANSTIEVAYTG 811
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +2
Query: 269 SAVCGSDGQTYRSLCKLRRQAC---RKPAKHLVVDYHG 373
S VC ++G T+ ++C + + AC +K K + V Y G
Sbjct: 930 SPVCDTEGVTHANMCLMDQNACIQMKKNKKTIQVSYQG 967
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 257 CRRVSAVCGSDGQTYRSLCKLRRQAC 334
C AVC S+GQT+ + C +++ C
Sbjct: 1024 CESSGAVCDSEGQTHMNHCVYQQRRC 1049
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 266 VSAVCGSDGQTYRSLCKLRRQACRKPAKHLVVDYHG 373
+ VCG+D TY +LC LR ++ + L+ Y+G
Sbjct: 25 IRPVCGTDNVTYNNLCFLR--CVQRTNEDLLFFYNG 58
Score = 27.1 bits (57), Expect = 9.3
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Frame = +2
Query: 251 ASCRRVSA-VCGSDGQTYRSLCKLRRQACRKPAKH-----LVVDYHG 373
ASC + VC S G+T+ SLC C H L +DY G
Sbjct: 1071 ASCPKTGQPVCDSRGRTHDSLCHFHNSKCIFDKIHTQNTTLTLDYQG 1117
>U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1
preproprotein protein.
Length = 1042
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 275 VCGSDGQTYRSLCKLRRQACRK 340
VCG+DGQ +R C Q C+K
Sbjct: 527 VCGTDGQCWRGNCSDSHQQCQK 548
>AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical
protein Y37D8A.13 protein.
Length = 1042
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 275 VCGSDGQTYRSLCKLRRQACRK 340
VCG+DGQ +R C Q C+K
Sbjct: 527 VCGTDGQCWRGNCSDSHQQCQK 548
>AF016447-13|AAG24017.1| 334|Caenorhabditis elegans Serpentine
receptor, class h protein268 protein.
Length = 334
Score = 29.1 bits (62), Expect = 2.3
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 378 IKILSTKSYLIFSQNINFRYVLVVSTMFGY 467
I I+ + Y++F+QN +R ++ T+F Y
Sbjct: 107 IDIIENRYYIVFAQNTKWRRYRIILTIFNY 136
>L21758-1|AAA16827.1| 264|Caenorhabditis elegans osteonectin
protein.
Length = 264
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 275 VCGSDGQTYRSLCKLRRQAC 334
VC ++ QT+ SLC L R+ C
Sbjct: 91 VCANNNQTFTSLCDLYRERC 110
>AF036692-3|AAB88325.1| 264|Caenorhabditis elegans Osteonectin
(sparc) related protein1 protein.
Length = 264
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 275 VCGSDGQTYRSLCKLRRQAC 334
VC ++ QT+ SLC L R+ C
Sbjct: 91 VCANNNQTFTSLCDLYRERC 110
>Z81529-11|CAB04297.1| 249|Caenorhabditis elegans Hypothetical
protein F35E8.13 protein.
Length = 249
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -1
Query: 365 NLRPSA*LACDRLVGVICTASGKSARRCRTPRSLCGT 255
+++ +A C R G+ C SG + PR CGT
Sbjct: 92 DMKNAAQSTCPRTCGLCCQTSGYNCPNVAYPRLNCGT 128
>Z81529-8|CAB04291.1| 249|Caenorhabditis elegans Hypothetical
protein F35E8.10 protein.
Length = 249
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -1
Query: 365 NLRPSA*LACDRLVGVICTASGKSARRCRTPRSLCGT 255
+++ +A C R G+ C SG + PR CGT
Sbjct: 92 DMKNAAQSTCPRTCGLCCQTSGYNCPNVAYPRLNCGT 128
>U64859-9|AAC69090.1| 378|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 9 protein.
Length = 378
Score = 27.1 bits (57), Expect = 9.3
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = -3
Query: 360 TTKCLAGLRQACRRNLHSER*VCPSLPHTALTLRHDAAQTHLARPPLTTQRRPAP 196
+T+C +Q+CR+ S V P + T + PP TT PAP
Sbjct: 77 STQCAPACQQSCRQQCQSAPAVSQCQPMCQQQCQSQC--TPMYNPPATTTTTPAP 129
>U64859-8|AAC69096.1| 378|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 57
protein.
Length = 378
Score = 27.1 bits (57), Expect = 9.3
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = -3
Query: 360 TTKCLAGLRQACRRNLHSER*VCPSLPHTALTLRHDAAQTHLARPPLTTQRRPAP 196
+T+C +Q+CR+ S V P + T + PP TT PAP
Sbjct: 77 STQCAPACQQSCRQQCQSAPAVSQCQPMCQQQCQSQC--TPMYNPPATTTTTPAP 129
>AC024877-7|AAF60907.3| 438|Caenorhabditis elegans Hypothetical
protein Y95B8A.11 protein.
Length = 438
Score = 27.1 bits (57), Expect = 9.3
Identities = 10/32 (31%), Positives = 22/32 (68%)
Frame = -3
Query: 114 VEFYKNTVF*LIILNHRRYPLIA*ISESINFN 19
++FY+N +F +I NH + + + ++ S+NF+
Sbjct: 11 IDFYRNFLF--LIFNHFNFEMASSVTTSLNFS 40
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,433,582
Number of Sequences: 27780
Number of extensions: 218701
Number of successful extensions: 528
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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