Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10j19
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     78   1e-15
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    26   4.1  
SPAC23C11.17 |||mitochondrial inner membrane protein involved in...    26   5.4  

>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 77.8 bits (183), Expect = 1e-15
 Identities = 38/94 (40%), Positives = 52/94 (55%)
 Frame = -2

Query: 538 KTLPFAMFAQAVVLVAYNSVMTSQYFIWFLSLLPLVLKDFKMEPGKIVYLVFLWIATQCA 359
           K LP  +FAQ    V +N V TSQYF+W+L  LPLVL + K+   K +  + LWI  Q  
Sbjct: 715 KNLPGTLFAQTFAFVTFNKVCTSQYFMWYLVFLPLVLPNSKLLSKKGLICLSLWIIGQLL 774

Query: 358 WLFFAXQLXFKCXQVFMLIWXXSVMFYGXNVFIL 257
           WL  A  L      VF+ +W   ++F+  NV+ L
Sbjct: 775 WLISAYNLEMLGKSVFIPLWLSGLLFFFFNVYEL 808


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
 Frame = -2

Query: 523 AMFAQAVVLVAYNSVM---TSQYF---IWFLSLLPLVLKDFKMEPGKIVYLVF 383
           ++F  A +++++N  M    SQ+     +  ++LP V + F   PG +V+ VF
Sbjct: 334 SLFNYAAIIISFNHQMIPHVSQFCHVRSYLSAILPSVCRIFLPSPGTVVFCVF 386


>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
           potassium ion transport|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 343 TRKTTKHIESLSRGKPSKQFYXVPF*SLLIPXVI 444
           +R+ T+ ++ + R  P   F  VPF  LL+P  +
Sbjct: 161 SRQLTRTLKDIGRLVPFSVFVVVPFAELLLPIAV 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,131,145
Number of Sequences: 5004
Number of extensions: 36537
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)