Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10j19
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0629 + 26248960-26249236,26249766-26249894,26250291-262508...    92   3e-19

>03_05_0629 +
           26248960-26249236,26249766-26249894,26250291-26250847,
           26250933-26251250
          Length = 426

 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 40/103 (38%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
 Frame = -2

Query: 538 KTLPFAMFAQAVVLVAYNSVMTSQYFIWFLSLLPLVLKDFKME-PGKIVYLVFLWIATQC 362
           + LPF +F Q V  VA+N VMT+QYF+WF  LLPL+L    M+   K +  + +W+ +Q 
Sbjct: 303 RDLPFCLFLQTVAFVAFNKVMTAQYFVWFFCLLPLILPWTTMKLKWKGLACILVWMGSQL 362

Query: 361 AWLFFAXQLXFKCXQVFMLIWXXSVMFYGXNVFILTQLIKYYR 233
            WL +A  L FK   VF+ +W   +MF   N+F++  +I +++
Sbjct: 363 HWLMWAYMLEFKGQNVFIPLWAAGLMFLAANIFVMLMVINHHK 405


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,362,379
Number of Sequences: 37544
Number of extensions: 197337
Number of successful extensions: 322
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)