Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10j19
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49907-1|CAA90090.1|  417|Caenorhabditis elegans Hypothetical pr...    81   7e-16
Z66513-6|CAA91335.1|  565|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z68749-3|CAA92958.1|  288|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AF244356-1|AAF70462.1|  288|Caenorhabditis elegans long chain po...    27   8.7  

>Z49907-1|CAA90090.1|  417|Caenorhabditis elegans Hypothetical
           protein B0491.1 protein.
          Length = 417

 Score = 81.0 bits (191), Expect = 7e-16
 Identities = 40/101 (39%), Positives = 52/101 (51%)
 Frame = -2

Query: 532 LPFAMFAQAVVLVAYNSVMTSQYFIWFLSLLPLVLKDFKMEPGKIVYLVFLWIATQCAWL 353
           LPF  F      V YN V TSQYF+W++ LLPL+     M     + L+  W ATQ  WL
Sbjct: 310 LPFCWFITTFAFVTYNKVCTSQYFVWYIVLLPLLAHKIMMSRQLALSLMAAWFATQGIWL 369

Query: 352 FFAXQLXFKCXQVFMLIWXXSVMFYGXNVFILTQLIKYYRP 230
             A    F+    F L++  S +F   N FIL Q+I +Y P
Sbjct: 370 LAAYLFEFQGWNTFFLMFLASCLFLIANSFILKQIINHYVP 410


>Z66513-6|CAA91335.1|  565|Caenorhabditis elegans Hypothetical
           protein F54D5.9 protein.
          Length = 565

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 14  LSTRRNELCNLLKRYVLTHKFFKIRKAINL 103
           LS    +LC+ +K YV TH FF+  +  NL
Sbjct: 125 LSLTSTKLCSRVKTYVSTHDFFRRMQLDNL 154


>Z68749-3|CAA92958.1|  288|Caenorhabditis elegans Hypothetical
           protein F56H11.4 protein.
          Length = 288

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = -2

Query: 358 WLFFAXQLXFKCXQVFMLIWXXSVMFYGXNVFILTQLIKYYRPGYAFGINESG 200
           WLF A +L      +F+++    +MF      ILT +  +Y      G N  G
Sbjct: 128 WLFMASKLFELVDTIFLVLRKRPLMFLHWYHHILTMIYAWYSHPLTPGFNRYG 180


>AF244356-1|AAF70462.1|  288|Caenorhabditis elegans long chain
           polyunsaturated fattyacid elongation enzyme protein.
          Length = 288

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = -2

Query: 358 WLFFAXQLXFKCXQVFMLIWXXSVMFYGXNVFILTQLIKYYRPGYAFGINESG 200
           WLF A +L      +F+++    +MF      ILT +  +Y      G N  G
Sbjct: 128 WLFMASKLFELVDTIFLVLRKRPLMFLHWYHHILTMIYAWYSHPLTPGFNRYG 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,656,352
Number of Sequences: 27780
Number of extensions: 200893
Number of successful extensions: 459
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)