Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10j19
         (647 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   2.5  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   3.4  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    23   3.4  
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    21   7.8  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    21   7.8  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    21   7.8  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    21   7.8  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 464 VLXCHDAVISDQHDGLREHCER 529
           VL CH A I+ +   ++E C+R
Sbjct: 360 VLDCHTAHIACKFADIKEKCDR 381


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 464 VLXCHDAVISDQHDGLREHCER 529
           VL CH A I+ +   ++E C+R
Sbjct: 360 VLDCHTAHIACKFAEIKEKCDR 381


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 464 VLXCHDAVISDQHDGLREHCER 529
           VL CH A I+ +   ++E C+R
Sbjct: 71  VLDCHTAHIACKFAEIKEKCDR 92


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 344 REKQPSTLSRYPEENQVN 397
           RE+    LSR PE+  VN
Sbjct: 52  REQMAGILSRIPEQGVVN 69


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 344 REKQPSTLSRYPEENQVN 397
           RE+    LSR PE+  VN
Sbjct: 100 REQMAGILSRIPEQGVVN 117


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 344 REKQPSTLSRYPEENQVN 397
           RE+    LSR PE+  VN
Sbjct: 100 REQMAGILSRIPEQGVVN 117


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 344 REKQPSTLSRYPEENQVN 397
           RE+    LSR PE+  VN
Sbjct: 100 REQMAGILSRIPEQGVVN 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,380
Number of Sequences: 438
Number of extensions: 2721
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)