Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10j18
(774 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy... 30 0.32
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 30 0.32
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 29 0.74
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 27 3.9
SPAC19D5.02c |||peroxisomal membrane protein Pex22 |Schizosaccha... 27 3.9
SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb... 27 3.9
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 26 5.2
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 26 5.2
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac... 26 5.2
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 26 6.9
SPBC32H8.01c ||SPBP22H7.10c|conserved fungal protein|Schizosacch... 26 6.9
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 26 6.9
SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces... 26 6.9
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 25 9.1
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c... 25 9.1
>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 215
Score = 30.3 bits (65), Expect = 0.32
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -2
Query: 341 LTGFECRCGGLFCAVHRYSDKHEC 270
L G C G FCA HR + H+C
Sbjct: 162 LAGNCLHCNGRFCAAHRLMEDHDC 185
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 30.3 bits (65), Expect = 0.32
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = -2
Query: 647 LDDKLELSRIRTDSVQEDVLRIQDDEETEEYSSKHVRPNTQTVTIKESTNQIQTRKTSLK 468
LD + ++ RT ++ + + + YSS H + N + TIKE N+I+ + L
Sbjct: 481 LDSQNFIASFRTFTLAIKISLLTNKVYDMWYSSLHGKANLKAATIKEIVNEIEAWRQQLS 540
Query: 467 RKLE 456
LE
Sbjct: 541 PDLE 544
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 29.1 bits (62), Expect = 0.74
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 8/103 (7%)
Frame = -2
Query: 758 NEESASIENKSGSEDINDSSSLRNVD---GTKGVDPQKIKLDDKLELSRIRTDSVQEDVL 588
+ S+ E++S SED + SSS + + +K D D + + S +DS E
Sbjct: 237 SSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSS 296
Query: 587 RIQD-----DEETEEYSSKHVRPNTQTVTIKESTNQIQTRKTS 474
D + SS+ NT T T E + Q T TS
Sbjct: 297 EDSDSTSSSSDSDSSSSSEDGNSNTDTTTSGEVSAQSSTNSTS 339
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 26.6 bits (56), Expect = 3.9
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = -2
Query: 767 ERRNEESASIENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRI-RTDSVQEDV 591
+R N +SA++ G+E D + N V + D+K+ R+ + S ++DV
Sbjct: 1831 KRHNIDSANLSR--GTERDED---IPNKRAKNKVSTDQTAADNKVTKPRLDESSSSKQDV 1885
Query: 590 LRIQDDEETEEYSSK 546
L D+ E E+ SSK
Sbjct: 1886 LNKIDESEIEQASSK 1900
>SPAC19D5.02c |||peroxisomal membrane protein Pex22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 26.6 bits (56), Expect = 3.9
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = -2
Query: 758 NEESASIENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRIRTDSVQEDVLRIQ 579
+ ESA +E S I ++ G++ PQK K +K + +V ED L +
Sbjct: 127 DSESAVVEQLHPSSPIPILTTAVRKKGSRPSKPQKEKQGNKQGSKTEESPNVDEDELESE 186
Query: 578 DDEET 564
+E+T
Sbjct: 187 PEEKT 191
>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 26.6 bits (56), Expect = 3.9
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = -2
Query: 629 LSRIRTDSVQEDVLRIQDDEETEEYSSKHVRPNTQTVTIKESTNQIQTRKTSLKRKLEEE 450
LS I DS +D+ ++++ EEY+ V P V KES + R L +L E
Sbjct: 335 LSPILMDSFGDDLQKLKETYGEEEYNLYLVDPYRYRVKRKESFYDLAVRLEPLILELGRE 394
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -2
Query: 596 DVLRIQDDEETEEYSSKHVRPNTQTVTIKESTNQIQTRKTSLKRKLEEE 450
DV+ I+ D + SSK RPN ++++ ++ R S+ K EE+
Sbjct: 97 DVVSIRQDFQ----SSKKKRPNETDISVEGVVTRVHERHISVALKSEED 141
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 26.2 bits (55), Expect = 5.2
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Frame = -2
Query: 701 SSLRNVDGTKGVDPQKIKLD-DKLELSRIR--TDSVQEDVLRIQDDEETEEYSSKHVRPN 531
+ R G K DP ++ L +KL +S ++ T+ + VL + E T S+ RP
Sbjct: 92 TQFREAMGQKLNDPYQVLLRRNKLPMSLLQENTEIPKVRVLESEPFENTFGPKSQRKRPK 151
Query: 530 TQTVTIKESTNQIQTRKTSLKRKLEE 453
++ E + ++ + + K+EE
Sbjct: 152 ISFDSVAELAKESDEKQNAYEEKIEE 177
>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 26.2 bits (55), Expect = 5.2
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -2
Query: 758 NEESASIENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRIRTDSVQEDVLR-I 582
+EE +E + +EDI + +N+D + ++ LD E +I T + + I
Sbjct: 133 DEEKDELEEERIAEDIAQNEVEQNIDDVEDLEEVNDTLDANAESPQIETIHLTDATGNPI 192
Query: 581 QDDEETEEYSS 549
+D E++ S
Sbjct: 193 EDSSESDSEES 203
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 25.8 bits (54), Expect = 6.9
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = -2
Query: 719 EDINDSSSLRNVDGTKGVDPQKIKLDDK-LELSRIRTDSVQEDVLRIQDDEETEEYSSKH 543
++I+ SL N+D DP + K++ K L SR++ SV++ LRI T +YSS
Sbjct: 17 KEISSFGSLTNID--LHTDPYE-KVEAKALSRSRLKNQSVKKTDLRI-----TNDYSSLF 68
Query: 542 VRPNTQTVTIKE 507
V + TI +
Sbjct: 69 VSIENKKNTIPD 80
>SPBC32H8.01c ||SPBP22H7.10c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 25.8 bits (54), Expect = 6.9
Identities = 15/74 (20%), Positives = 30/74 (40%)
Frame = -2
Query: 743 SIENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRIRTDSVQEDVLRIQDDEET 564
S+ NK + + +NV+ +PQ+ K + LE+ + + + + +
Sbjct: 69 SVTNKIDTNKLEAKDESKNVEKDATGNPQESKQEPNLEVQQTEKEKDVDSASAENESINS 128
Query: 563 EEYSSKHVRPNTQT 522
SSK TQ+
Sbjct: 129 SSSSSKECSTQTQS 142
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 25.8 bits (54), Expect = 6.9
Identities = 18/69 (26%), Positives = 34/69 (49%)
Frame = -2
Query: 773 KLERRNEESASIENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRIRTDSVQED 594
+L E ++S+EN S DSSS + + ++P+ + D+ + + + V++D
Sbjct: 82 RLAFSKELNSSLENDEESSQQEDSSSKSDSEEESSMEPKTTEYDE--DDKHVTVEIVEDD 139
Query: 593 VLRIQDDEE 567
DDEE
Sbjct: 140 -----DDEE 143
>SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 25.8 bits (54), Expect = 6.9
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = -2
Query: 614 TDSVQEDVLRIQDDEETEEYSSKHVRPNTQTVTIKESTNQIQTRKTSLKR--KLEEE 450
T + +ED + +D+E + SK +R + Q V K + + R + LK+ KLE+E
Sbjct: 48 TSNEEEDAISDMEDKEDVSFGSKILRVSHQEVE-KPTLSATVGRVSFLKKMPKLEDE 103
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.4 bits (53), Expect = 9.1
Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = -2
Query: 728 SGSEDINDSSSLRNVDGTK-GVDPQKIKLDDKLELSRIRTDSVQEDVLRIQDDEETEEY 555
S S+ + S + V T+ K + + + + + S+++D+L+ ++DEE EE+
Sbjct: 278 SQSQTVETSGPSKEVPTTQPDASAAKPRTEFDFQTANQKFQSMKDDLLKGKNDEEAEEF 336
>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 596
Score = 25.4 bits (53), Expect = 9.1
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 238 SCAPSSR*SNEHSCLSLYRCTAQNNPPHRHSNPVSPTFLRQTAH 369
S + SS S HS SL + +NP S P PT R +H
Sbjct: 532 STSSSSGISPSHSSASLAHLSQASNPNGSSSAPHRPTSARVGSH 575
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,431,842
Number of Sequences: 5004
Number of extensions: 42211
Number of successful extensions: 197
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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