Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10j18
         (774 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.2  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   5.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -2

Query: 737  ENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDD 639
            EN+ G+ D +D+ ++   +      P  I++DD
Sbjct: 955  ENEIGASDPSDTVTIITAEEAPSGPPTSIRVDD 987


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -2

Query: 578 DDEETEEYSSKHVRPNTQTVTIKESTNQIQTRKTSL 471
           DDE    Y + + +  +Q +T + +TN++ T+  +L
Sbjct: 278 DDEFKGTYKTLYKQMWSQNITERPTTNEVITKIDTL 313


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,880
Number of Sequences: 438
Number of extensions: 2696
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)