Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10j17
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    31   0.19 
SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces ...    27   4.2  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    26   5.5  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    26   5.5  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    26   7.3  
SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces po...    25   9.6  
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch...    25   9.6  

>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 17/63 (26%), Positives = 33/63 (52%)
 Frame = -3

Query: 291  HYKNRYRKSKLDANYVINFDTNLSQLVSKPRKLKKVLAQENLLLKTSFCSNEFIMNANEN 112
            +YK +Y   +LD   + + DTN  +L  K R L      E+LL +++    +  + ++EN
Sbjct: 1169 NYKKKYEGLQLDLEGLKDVDTNFQELSKKHRDL--TFNHESLLRQSASYKEKLSLASSEN 1226

Query: 111  RSI 103
            + +
Sbjct: 1227 KDL 1229


>SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 311 WRNVLVLIIKIDTENPNW 258
           WRN+ +LI  +   NPNW
Sbjct: 44  WRNIQMLISWLQYTNPNW 61


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -3

Query: 501 NSKNSTFDYIVRPIDVHVQPQVIFDANITRKAIGDKLTKKSTKHKRII 358
           + K   F   VRP+ +HV P V++      K +   L K+S ++ R +
Sbjct: 327 DKKMLKFIITVRPVHLHVSPWVVYRRYRGFKTLYYLLKKQSARNGRAV 374


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/59 (20%), Positives = 28/59 (47%)
 Frame = -3

Query: 339  FKYKTPKYTMEKRFSTHYKNRYRKSKLDANYVINFDTNLSQLVSKPRKLKKVLAQENLL 163
            FK +TP Y    +      +R+ + ++  NY++N      +++S    + K+  Q  ++
Sbjct: 830  FKKQTPYYNQADKVHLWQSSRFHEKQILLNYMLNRTRYCLEILSACAIVTKIREQARII 888


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = -3

Query: 276 YRKSKLDANYVINFDTNLSQLVSKPRKLKKVLAQENLLLKTSFCSNEFIM 127
           Y   K D N +        +L+ + +++   L + N+L++TS   + FI+
Sbjct: 317 YLVRKNDTNRIYAMKKISKKLIVRKKEVTHTLGERNILVRTSLDESPFIV 366


>SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 458

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = +2

Query: 497 ELSLSINGIKAFDSMNFMNLDSSC-----NTLLSDFEQSKSSISLIVKF 628
           +  L+ N IKAF+    +++  SC     +TL+     S  ++ L + F
Sbjct: 2   DFGLTNNSIKAFEDQKLLHIHQSCVSYPSDTLICSIPVSAKNVDLNIPF 50


>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
           Nak1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 22/87 (25%), Positives = 37/87 (42%)
 Frame = -3

Query: 699 TKMLNDQANTHWKFAEVPNLTXESNLTINEIEDFDCSKSESKVLHEESRFIKFIESNAFI 520
           +K+ +D + ++ + A   +   E + +  E+   D S   SK    +S+  K  E     
Sbjct: 383 SKISDDDSPSNAEGASTEDSKGEVSYSQIELPSLDSSNLSSKKSTIQSKHTKQAEDYDLF 442

Query: 519 PFIDSDNSKNSTFDYIVRPIDVHVQPQ 439
                 NSK S+   I RP+   VQ Q
Sbjct: 443 VGRTRSNSKTSSDQSIKRPLPRVVQRQ 469


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,179,490
Number of Sequences: 5004
Number of extensions: 66580
Number of successful extensions: 193
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)