Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10j17
         (809 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK126213-1|BAC86488.1|  262|Homo sapiens protein ( Homo sapiens ...    33   1.2  
AK128694-1|BAC87575.1|  291|Homo sapiens protein ( Homo sapiens ...    31   6.5  

>AK126213-1|BAC86488.1|  262|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44225 fis, clone THYMU3006168. ).
          Length = 262

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +1

Query: 340 MYILKRDYSFVFCTFLCQFISNGLPSY--ICIEDYLGLHVYVY 462
           MYI    Y+++ C F+C  +   + SY  +CI  Y+ +H Y Y
Sbjct: 67  MYIHMHAYAYM-CVFICTHMHTYVYSYARVCIHMYIHIHAYAY 108


>AK128694-1|BAC87575.1|  291|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46861 fis, clone UTERU3011092. ).
          Length = 291

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
 Frame = +1

Query: 340 MYILKRDYSFVF-------CTFLCQFISNGLPSYICIEDYLGLHVYVY 462
           MYI    Y++++       C  +C FI   + +Y+CI  Y  +H+ V+
Sbjct: 101 MYIHMHAYAYIYVYSYTRICIHICIFICTHMHTYMCIHMYTCIHICVF 148


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,240,127
Number of Sequences: 237096
Number of extensions: 1856707
Number of successful extensions: 3264
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3253
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10036353240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)