Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10j17
         (809 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT023775-1|AAZ41783.1|  681|Drosophila melanogaster LD29573p pro...    29   9.9  
AE014296-1132|AAN12085.1|  681|Drosophila melanogaster CG8368-PB...    29   9.9  
AE014296-1131|AAF50654.1|  681|Drosophila melanogaster CG8368-PA...    29   9.9  

>BT023775-1|AAZ41783.1|  681|Drosophila melanogaster LD29573p
           protein.
          Length = 681

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = -3

Query: 729 GEVTL*DRAKTKMLNDQA----NTHWKFAEVPNLTXESNLTINEIEDFDCSKSESKVLHE 562
           G+  + + AK  + N QA    + H        L  +  L +  I   + SKSES  +HE
Sbjct: 245 GQKIIDEIAKIPLTNAQARRLIDEHGSLESAVELNKDPTLFVKTIFPIESSKSESDDMHE 304

Query: 561 ESRF 550
           + +F
Sbjct: 305 DDKF 308


>AE014296-1132|AAN12085.1|  681|Drosophila melanogaster CG8368-PB,
           isoform B protein.
          Length = 681

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = -3

Query: 729 GEVTL*DRAKTKMLNDQA----NTHWKFAEVPNLTXESNLTINEIEDFDCSKSESKVLHE 562
           G+  + + AK  + N QA    + H        L  +  L +  I   + SKSES  +HE
Sbjct: 245 GQKIIDEIAKIPLTNAQARRLIDEHGSLESAVELNKDPTLFVKTIFPIESSKSESDDMHE 304

Query: 561 ESRF 550
           + +F
Sbjct: 305 DDKF 308


>AE014296-1131|AAF50654.1|  681|Drosophila melanogaster CG8368-PA,
           isoform A protein.
          Length = 681

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = -3

Query: 729 GEVTL*DRAKTKMLNDQA----NTHWKFAEVPNLTXESNLTINEIEDFDCSKSESKVLHE 562
           G+  + + AK  + N QA    + H        L  +  L +  I   + SKSES  +HE
Sbjct: 245 GQKIIDEIAKIPLTNAQARRLIDEHGSLESAVELNKDPTLFVKTIFPIESSKSESDDMHE 304

Query: 561 ESRF 550
           + +F
Sbjct: 305 DDKF 308


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,439,211
Number of Sequences: 53049
Number of extensions: 608666
Number of successful extensions: 1980
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1980
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3798466620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)