Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10j17
(809 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 29 0.039
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 28 0.12
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 26 0.47
DQ232888-1|ABB36783.1| 499|Apis mellifera cytochrome P450 monoo... 23 3.3
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.4
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.4
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.4
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.4
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.4
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.4
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 4.4
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 4.4
AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex det... 22 5.8
AY313893-1|AAQ82184.1| 437|Apis mellifera major royal jelly pro... 22 5.8
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 29.5 bits (63), Expect = 0.039
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = -3
Query: 399 DKLTKKSTKHKRIITFKNIHFKYKTPKYTMEKRFSTHYKNRYRKSKLDANYVINFD 232
D+ ++ +K +II+ + ++KY Y ++ + N Y K NY+IN +
Sbjct: 302 DRKERERSKEPKIISSLSNNYKYSN--YNNYNNYNNNNYNNYNKKLYYKNYIINIE 355
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 27.9 bits (59), Expect = 0.12
Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Frame = -3
Query: 399 DKLTKKSTKHKRIITFKNIHFKYKT-----PKYTMEKRFSTHYKNRYRKSKLDANYV 244
D+ ++ +K +II+ + ++KY Y ++ +Y N Y+K + NY+
Sbjct: 302 DRTERERSKEPKIISSLSNNYKYSNYNNYNNNYNNYNNYNNNYNNNYKKLYYNINYI 358
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 25.8 bits (54), Expect = 0.47
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 567 VILCFQILSNQSLQFR*LSNLIXVLDLALP 656
+ LC IL +Q++ F +S +I LALP
Sbjct: 267 IALCINILLSQTMFFLLISEIIPSTSLALP 296
>DQ232888-1|ABB36783.1| 499|Apis mellifera cytochrome P450
monooxygenase protein.
Length = 499
Score = 23.0 bits (47), Expect = 3.3
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +2
Query: 689 SIFVLALSYKVTSPKPIPFLRNTTTLFI 772
S F S V PKP+PF T L +
Sbjct: 24 STFDFWKSRGVVGPKPVPFFGTTKDLIL 51
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.4
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +2
Query: 296 LKRFSMVYFGVLYLKCIFLNVIILLCFVL 382
++R ++ YF L + C+ ++ + LL F L
Sbjct: 190 IRRRTLYYFFNLIVPCVLISSMALLGFTL 218
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.4
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +2
Query: 296 LKRFSMVYFGVLYLKCIFLNVIILLCFVL 382
++R ++ YF L + C+ ++ + LL F L
Sbjct: 190 IRRRTLYYFFNLIVPCVLISSMALLGFTL 218
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.4
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +2
Query: 296 LKRFSMVYFGVLYLKCIFLNVIILLCFVL 382
++R ++ YF L + C+ ++ + LL F L
Sbjct: 190 IRRRTLYYFFNLIVPCVLISSMALLGFTL 218
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.4
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +2
Query: 296 LKRFSMVYFGVLYLKCIFLNVIILLCFVL 382
++R ++ YF L + C+ ++ + LL F L
Sbjct: 190 IRRRTLYYFFNLIVPCVLISSMALLGFTL 218
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.4
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +2
Query: 296 LKRFSMVYFGVLYLKCIFLNVIILLCFVL 382
++R ++ YF L + C+ ++ + LL F L
Sbjct: 190 IRRRTLYYFFNLIVPCVLISSMALLGFTL 218
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.4
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +2
Query: 296 LKRFSMVYFGVLYLKCIFLNVIILLCFVL 382
++R ++ YF L + C+ ++ + LL F L
Sbjct: 190 IRRRTLYYFFNLIVPCVLISSMALLGFTL 218
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 4.4
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +2
Query: 296 LKRFSMVYFGVLYLKCIFLNVIILLCFVL 382
++R ++ YF L + C+ ++ + LL F L
Sbjct: 258 IRRRTLYYFFNLIVPCVLISSMALLGFTL 286
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 4.4
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +2
Query: 296 LKRFSMVYFGVLYLKCIFLNVIILLCFVL 382
++R ++ YF L + C+ ++ + LL F L
Sbjct: 258 IRRRTLYYFFNLIVPCVLISSMALLGFTL 286
>AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 22.2 bits (45), Expect = 5.8
Identities = 10/41 (24%), Positives = 19/41 (46%)
Frame = -3
Query: 390 TKKSTKHKRIITFKNIHFKYKTPKYTMEKRFSTHYKNRYRK 268
+KK + + F++ + +Y+ E+R S YRK
Sbjct: 207 SKKYATSSNSLRNRTHDFQHTSSRYSRERRCSRDRNREYRK 247
>AY313893-1|AAQ82184.1| 437|Apis mellifera major royal jelly
protein MRJP6 protein.
Length = 437
Score = 22.2 bits (45), Expect = 5.8
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 512 INGIKAFDSMNFMNLDSSCNTLLSDFEQSKSS 607
+N FD +NF L ++ N L+ + +KS+
Sbjct: 390 VNNDFNFDEVNFRILGANVNNLIKNTRCAKSN 421
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,124
Number of Sequences: 438
Number of extensions: 4669
Number of successful extensions: 22
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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