Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10j16
         (830 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0081 + 22248963-22249016,22249120-22249165,22249259-222493...    52   7e-07
01_05_0668 - 24147412-24147618,24148019-24148286,24149506-241497...    51   1e-06
02_05_0177 + 26505956-26506202,26506838-26507247,26507448-265076...    31   0.85 
06_01_0135 + 1039018-1041474                                           30   2.0  
05_02_0047 + 6006808-6007129,6009229-6009890,6009980-6010129,601...    28   7.9  

>05_05_0081 +
           22248963-22249016,22249120-22249165,22249259-22249357,
           22250178-22250337,22250858-22251128,22251295-22251486
          Length = 273

 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
 Frame = -3

Query: 726 FFFQTSNS-PTMISLFCLYGYSLSIYIPVAIFWTIQISWLQWLFVLMAAFVSGAVLIFWL 550
           F FQ   S P+++  +C++GYSL I+IP ++   I + +L+W+ +++    S +  I   
Sbjct: 181 FLFQYFGSRPSLVRFWCMWGYSLFIFIPASVLLLIPVEFLRWVIIILVGGAS-SWFISLN 239

Query: 549 LPALKKSKYFYILVGSILAFHFLLATGFMLYFF 451
           L    +     +L+ S     F LA    ++FF
Sbjct: 240 LKECTEGADMMVLIASAAVLQFTLALFIKVFFF 272


>01_05_0668 -
           24147412-24147618,24148019-24148286,24149506-24149728,
           24149822-24149996
          Length = 290

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
 Frame = -3

Query: 696 MISLFCLYGYSLSIYIPVAIFWTIQISWLQWLFVLMAAFVSGAVLIFWLLPALKKS-KYF 520
           ++ L+CLYGYSL I+IP ++   + I   +W+   +A F+S   +   L   +  S + +
Sbjct: 204 LVQLWCLYGYSLFIFIPASLLSIVPIEIFRWVIAGVAGFMSATFVAMNLRAHIVNSGERW 263

Query: 519 YILVGSILAFHFLLATGFMLYFF 451
           +++V  I      LA    LYFF
Sbjct: 264 FLIVAGIFLLQLGLAVLLKLYFF 286


>02_05_0177 +
           26505956-26506202,26506838-26507247,26507448-26507624,
           26507775-26507999,26508089-26508265,26508357-26508593,
           26508855-26508944,26509102-26509254
          Length = 571

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -3

Query: 528 KYFYILVGSILAFHFLLATGFMLYF---FHGPNAVSAPGVPVTPSVA 397
           ++ Y +   I+A    +A GF L F   +  P   S PGVP+ P V+
Sbjct: 465 RFSYAIAFMIIALLIAVAAGFALQFRQVYVDPPGFSCPGVPIVPMVS 511


>06_01_0135 + 1039018-1041474
          Length = 818

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
 Frame = -2

Query: 592 DGCLCVRSSPHILAAASFEEIKI----FLYTCRIYS----CFSFLVGNWFYVILLS 449
           D  +C+  + H  AAA F  I       LY   IY      F FL+ NWF V LLS
Sbjct: 409 DTTMCLLLTAHHSAAAFFATINFAVTFLLYIIYIYEEVWELFVFLLSNWFAVSLLS 464


>05_02_0047 +
           6006808-6007129,6009229-6009890,6009980-6010129,
           6010765-6010857,6011370-6011675
          Length = 510

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = -3

Query: 483 LLATGFMLYFFHGPNAVSAPGVPVTPSVATIAP*FVTSPSHLHT*CIIIFLIKYIDSGRQ 304
           +LATGF+       +A+S+P +P  P  +   P FV   + L T  ++ FL      G+ 
Sbjct: 186 ILATGFVHMLHDAEHALSSPCLPAHPWRSFPFPGFVAMSAALAT-LVLDFLATRFYEGKH 244

Query: 303 R 301
           R
Sbjct: 245 R 245


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,463,988
Number of Sequences: 37544
Number of extensions: 461023
Number of successful extensions: 1203
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)