Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10j16
         (830 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125459-4|AAD12839.1|  287|Caenorhabditis elegans Hypothetical ...    77   2e-14
AF125459-3|AAX88817.1|  277|Caenorhabditis elegans Hypothetical ...    77   2e-14
AF125459-2|AAX88818.1|  414|Caenorhabditis elegans Hypothetical ...    77   2e-14
Z83116-3|CAB05561.1|  284|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U23510-2|AAC46787.1|  250|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U23510-1|AAN60495.1|  245|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z92804-2|CAB07253.2|  321|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z77661-1|CAB01186.1|  341|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AL132902-4|CAC14420.1| 1913|Caenorhabditis elegans Hypothetical ...    28   7.1  
U12964-3|AAA91222.2| 1032|Caenorhabditis elegans Nhl (ring finge...    28   9.4  

>AF125459-4|AAD12839.1|  287|Caenorhabditis elegans Hypothetical
           protein Y25C1A.7b protein.
          Length = 287

 Score = 77.0 bits (181), Expect = 2e-14
 Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
 Frame = -3

Query: 693 ISLFCLYGYSLSIYIPVAIFWTIQISWLQWLFVLMAAFVSGAVLIFWLLPALKKSKYFYI 514
           + L CLYGYSL+I+IPV++ W + I W +W  +  +  +SG VL   + PA++      I
Sbjct: 190 VDLVCLYGYSLAIFIPVSVLWIVDIGWFRWALIFASVGLSGTVLARAIWPAVQNDNNKMI 249

Query: 513 LVG---SILAFHFLLATGFMLYFFHGPNAV 433
             G   S++  HFLLA  F +YFF   + V
Sbjct: 250 AFGTVISVVVLHFLLAFTFKVYFFDSMHIV 279


>AF125459-3|AAX88817.1|  277|Caenorhabditis elegans Hypothetical
           protein Y25C1A.7a protein.
          Length = 277

 Score = 77.0 bits (181), Expect = 2e-14
 Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
 Frame = -3

Query: 693 ISLFCLYGYSLSIYIPVAIFWTIQISWLQWLFVLMAAFVSGAVLIFWLLPALKKSKYFYI 514
           + L CLYGYSL+I+IPV++ W + I W +W  +  +  +SG VL   + PA++      I
Sbjct: 180 VDLVCLYGYSLAIFIPVSVLWIVDIGWFRWALIFASVGLSGTVLARAIWPAVQNDNNKMI 239

Query: 513 LVG---SILAFHFLLATGFMLYFFHGPNAV 433
             G   S++  HFLLA  F +YFF   + V
Sbjct: 240 AFGTVISVVVLHFLLAFTFKVYFFDSMHIV 269


>AF125459-2|AAX88818.1|  414|Caenorhabditis elegans Hypothetical
           protein Y25C1A.7c protein.
          Length = 414

 Score = 77.0 bits (181), Expect = 2e-14
 Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
 Frame = -3

Query: 693 ISLFCLYGYSLSIYIPVAIFWTIQISWLQWLFVLMAAFVSGAVLIFWLLPALKKSKYFYI 514
           + L CLYGYSL+I+IPV++ W + I W +W  +  +  +SG VL   + PA++      I
Sbjct: 180 VDLVCLYGYSLAIFIPVSVLWIVDIGWFRWALIFASVGLSGTVLARAIWPAVQNDNNKMI 239

Query: 513 LVG---SILAFHFLLATGFMLYFFHGPNAV 433
             G   S++  HFLLA  F +YFF   + V
Sbjct: 240 AFGTVISVVVLHFLLAFTFKVYFFDSMHIV 269


>Z83116-3|CAB05561.1|  284|Caenorhabditis elegans Hypothetical
           protein M01B2.3 protein.
          Length = 284

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
 Frame = -3

Query: 645 VAIFWTIQISWLQWLFVLMAAFVSGAV--LIFWLLPALKKSKYFYILVGSILAFHFLLAT 472
           V + +T+ ++ L + ++L++   +  +  L FWL+ A         L+  +++F  +LAT
Sbjct: 51  VDVVYTLNLTTLMFYYLLISLSANFIIKNLTFWLVWASTSIGSMRSLLALLISFERVLAT 110

Query: 471 GFMLYF 454
            F +YF
Sbjct: 111 YFPIYF 116


>Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical
           protein D1046.4 protein.
          Length = 583

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 10/36 (27%), Positives = 24/36 (66%)
 Frame = -3

Query: 618 SWLQWLFVLMAAFVSGAVLIFWLLPALKKSKYFYIL 511
           +W +W++++ A  + G+V++FWL    +KS +  ++
Sbjct: 461 NW-RWIWLVFAVLLIGSVILFWLTFQFEKSDWDIVI 495


>U23510-2|AAC46787.1|  250|Caenorhabditis elegans Hypothetical
           protein R12C12.9a protein.
          Length = 250

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 606 WLFVLMAAFVSGAVLIFWLLPALKKSKY 523
           WL +L  A++SG +L+F  LP   K  +
Sbjct: 205 WLDILFIAYISGHILVFLSLPFFNKKLF 232


>U23510-1|AAN60495.1|  245|Caenorhabditis elegans Hypothetical
           protein R12C12.9b protein.
          Length = 245

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 606 WLFVLMAAFVSGAVLIFWLLPALKKSKY 523
           WL +L  A++SG +L+F  LP   K  +
Sbjct: 200 WLDILFIAYISGHILVFLSLPFFNKKLF 227


>Z92804-2|CAB07253.2|  321|Caenorhabditis elegans Hypothetical
           protein K05D4.3 protein.
          Length = 321

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/61 (22%), Positives = 29/61 (47%)
 Frame = -2

Query: 535 EIKIFLYTCRIYSCFSFLVGNWFYVILLSRTKRSKRSWRASDTVSGYYSSIICDFSKSFT 356
           +I + + TC I  CF F     FY+++    ++  RS      +  +YS+++  +   F 
Sbjct: 26  KIAVLVGTCSIVFCFIFP----FYIVVFRSNRQRDRSTPIFPIIKHFYSTVVRTYILHFG 81

Query: 355 Y 353
           +
Sbjct: 82  F 82


>Z77661-1|CAB01186.1|  341|Caenorhabditis elegans Hypothetical
           protein F40G12.1 protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -3

Query: 105 FLDFTVLKYISYLLYRIIVIYSIHFFFTFL 16
           FL F+ ++++ YL Y  I I S+HF  TFL
Sbjct: 39  FLVFSWIEFL-YLFYLFIFIRSMHFNLTFL 67


>AL132902-4|CAC14420.1| 1913|Caenorhabditis elegans Hypothetical
            protein Y71A12B.4 protein.
          Length = 1913

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 127  VVIKDNAKDFINLLALVMLYVNTFFFFIALVSRRAYGPPD 246
            ++I+D   D    L ++ML+V  F   +  + + AY P D
Sbjct: 1625 IIIRDLMYDLARFLVILMLFVAGFTLHVTSIFQPAYQPVD 1664


>U12964-3|AAA91222.2| 1032|Caenorhabditis elegans Nhl (ring finger
           b-box coiled coil)domain containing protein 2 protein.
          Length = 1032

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +2

Query: 221 ADEHTAHLMVSGYRRPWTSAMPGAEPSR-CLPLSMYLIKNIIIHYV 355
           AD +   ++V G   PW    PG +  + C P  +  ++   + YV
Sbjct: 768 ADTNNHRVVVCGPPHPWKIGRPGTDDGQLCFPRKVIALRGEAVRYV 813


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,020,452
Number of Sequences: 27780
Number of extensions: 421834
Number of successful extensions: 1387
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1384
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)