Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10j16
         (830 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    24   1.5  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   2.6  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   2.6  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   6.0  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   8.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   8.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   8.0  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 544 WQQPEYEDCSGHKGSHQ 594
           W   +YEDCSG   +H+
Sbjct: 115 WSFAKYEDCSGIVSAHK 131


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -3

Query: 657 IYIPVAIFWTIQISWL--QWLFVLMAAF-VSGAVLIFWLLPALKKSKYFYIL 511
           + +P+ I W I +SW     +  +MA F + G  L  ++L  +   +Y+ ++
Sbjct: 90  LMMPLEIGWAITVSWKAGDVMCRIMAFFRMFGLYLSSFVLVCISMDRYYAVI 141


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -1

Query: 563 SYSGCCQL*RNQNIFIYLSDLFLLFISCWQLVLCYTSF 450
           S+ GCC   R  +        FLLFI   Q+ +   +F
Sbjct: 66  SFFGCCGAIRESHCMTITFASFLLFILLVQIAVAVYAF 103


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 544 WQQPEYEDCSG 576
           W   +YEDCSG
Sbjct: 116 WSFAKYEDCSG 126


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 166 LALVMLYVNTFFFFIA 213
           LA+ +L+VN+F F IA
Sbjct: 10  LAVNVLFVNSFLFVIA 25


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 166 LALVMLYVNTFFFFIA 213
           LA+ +L+VN+F F IA
Sbjct: 10  LAVNVLFVNSFLFVIA 25


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 166 LALVMLYVNTFFFFIA 213
           LA+ +L+VN+F F IA
Sbjct: 10  LAVNVLFVNSFLFVIA 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,620
Number of Sequences: 438
Number of extensions: 5664
Number of successful extensions: 33
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)