Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10j15
         (808 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1033 - 8080179-8080685                                           45   8e-05
07_01_0793 - 6169661-6169936,6170942-6171025,6171473-6171590,617...    40   0.002
02_05_0651 + 30644241-30644615,30644751-30644858                       40   0.003
02_04_0020 - 18956282-18956461,18956591-18956740,18957934-189580...    33   0.20 
08_02_1015 - 23597445-23597628,23597654-23597877                       29   3.3  
03_01_0385 - 2988117-2988429,2988566-2988887,2988977-2989118           29   5.8  
06_01_0197 - 1525945-1526622                                           28   7.6  
01_03_0109 + 12630644-12630731,12630744-12630775,12631136-126312...    28   7.6  

>06_01_1033 - 8080179-8080685
          Length = 168

 Score = 44.8 bits (101), Expect = 8e-05
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
 Frame = -2

Query: 807 AMREVLEEAGVIGKLGRCLG--VFENREHKHRTE--VYVMTVTQELPEWEDSRLMGRKRQ 640
           A RE LEEAGV+G++G  LG   + +R +    E  V+ + VT EL  W +  +  R+R 
Sbjct: 75  ARREALEEAGVLGEIGASLGRWCYRSRRYDATYEGFVFPLRVTDELDRWPE--MAARRRS 132

Query: 639 WFSIDDAL 616
           W S   A+
Sbjct: 133 WVSPQQAM 140


>07_01_0793 -
           6169661-6169936,6170942-6171025,6171473-6171590,
           6172917-6172987
          Length = 182

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
 Frame = -2

Query: 807 AMREVLEEAGVIGKLGRCLGVFENREHKH----------RTEVYVMTVTQELPEWEDSRL 658
           A RE +EEAGV G L + LG ++ +   H          R  V+ + V +EL  W +   
Sbjct: 76  AAREAIEEAGVRGDLVQLLGFYDFKSKTHQDKFCPEGMCRAAVFALRVKEELASWPEQST 135

Query: 657 MGRKRQWFSIDDAL 616
             RKR W ++ +A+
Sbjct: 136 --RKRTWLTLSEAV 147


>02_05_0651 + 30644241-30644615,30644751-30644858
          Length = 160

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
 Frame = -2

Query: 807 AMREVLEEAGVIGKLGRCLGVFENREHKHRTE----VYVMTVTQELPEWEDSRLMGRKRQ 640
           A RE LEEAGV G     LG +  +  ++ T     ++ + VT EL +W +  +  RKR 
Sbjct: 67  ARREALEEAGVRGDTETSLGCWYYKSRRYDTTYEGFMFPLRVTDELLQWPE--MSSRKRT 124

Query: 639 WFSIDDAL 616
           W ++  A+
Sbjct: 125 WATVQQAM 132


>02_04_0020 -
           18956282-18956461,18956591-18956740,18957934-18958017,
           18958283-18958403,18958525-18958604
          Length = 204

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 11/74 (14%)
 Frame = -2

Query: 807 AMREVLEEAGVIGKLGRC-LG--VFENREHKHRTE--------VYVMTVTQELPEWEDSR 661
           A RE +EEAGV G + R  LG  VF+++  ++ +         ++ M VT+EL  W +  
Sbjct: 80  ASREAMEEAGVKGIVNRTTLGHWVFKSKSSQNSSSPRGACKGYIFAMEVTEELESWPEQA 139

Query: 660 LMGRKRQWFSIDDA 619
             GR+  W S  +A
Sbjct: 140 THGRR--WVSPGEA 151


>08_02_1015 - 23597445-23597628,23597654-23597877
          Length = 135

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 638 GSPLMMPWLSSPFTSQSSVTTFNNCVV 558
           G P  MPW  +P TSQ S  T+ N ++
Sbjct: 54  GPPATMPWCPAPDTSQVSPNTWYNLIL 80


>03_01_0385 - 2988117-2988429,2988566-2988887,2988977-2989118
          Length = 258

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 498 FENTNWEGY-T*SGHLACSVWNDAVVEGSDAGLACEGRAEP 617
           + N  W GY T +  L+ +++ND    G    +AC+ +AEP
Sbjct: 53  YGNLYWSGYGTNTAALSSALFNDGASCGQCYQIACDHQAEP 93


>06_01_0197 - 1525945-1526622
          Length = 225

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 787 GSRSDRETRTMSWSIREPRTQTPNRGLCY 701
           G R  R  R +S+S+R PRT  P RG+ +
Sbjct: 136 GLRPPRALRRLSYSLRCPRTGGPARGVVH 164


>01_03_0109 +
           12630644-12630731,12630744-12630775,12631136-12631217,
           12631357-12631481,12631593-12631772,12632239-12632607
          Length = 291

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
 Frame = -3

Query: 689 KNYPSGRIQDSWDVRGNGSPLMMP-----WLSSPFTSQSSVTTFNN 567
           K+Y   R++D W    +G P  MP      LS+P   + S TT NN
Sbjct: 66  KDYTKSRVEDIWKKMNSGMPAKMPKPVMNKLSTPAKEKKS-TTGNN 110


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,642,383
Number of Sequences: 37544
Number of extensions: 392807
Number of successful extensions: 934
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)