Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10j15
(808 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.20
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.20
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.20
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.20
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.20
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.20
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 27 0.20
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 27 0.20
AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 26 0.36
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 26 0.47
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 23 2.5
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 23 2.5
AB193550-1|BAD66824.1| 699|Apis mellifera soluble guanylyl cycl... 23 3.3
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 23 4.4
AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter... 22 5.8
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 22 7.7
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 27.1 bits (57), Expect = 0.20
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -1
Query: 226 SIKTKRHTLYYFFN*FVSVLFTI*KLLIDFVKNIFDNAHFLL-*TIMVNPHVMLGLQAE 53
+I+ +R TLYYFFN V + L+ F L TI+++ V L L AE
Sbjct: 187 TIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAE 245
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 27.1 bits (57), Expect = 0.20
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -1
Query: 226 SIKTKRHTLYYFFN*FVSVLFTI*KLLIDFVKNIFDNAHFLL-*TIMVNPHVMLGLQAE 53
+I+ +R TLYYFFN V + L+ F L TI+++ V L L AE
Sbjct: 187 TIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAE 245
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 27.1 bits (57), Expect = 0.20
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -1
Query: 226 SIKTKRHTLYYFFN*FVSVLFTI*KLLIDFVKNIFDNAHFLL-*TIMVNPHVMLGLQAE 53
+I+ +R TLYYFFN V + L+ F L TI+++ V L L AE
Sbjct: 187 TIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAE 245
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 27.1 bits (57), Expect = 0.20
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -1
Query: 226 SIKTKRHTLYYFFN*FVSVLFTI*KLLIDFVKNIFDNAHFLL-*TIMVNPHVMLGLQAE 53
+I+ +R TLYYFFN V + L+ F L TI+++ V L L AE
Sbjct: 187 TIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAE 245
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 27.1 bits (57), Expect = 0.20
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -1
Query: 226 SIKTKRHTLYYFFN*FVSVLFTI*KLLIDFVKNIFDNAHFLL-*TIMVNPHVMLGLQAE 53
+I+ +R TLYYFFN V + L+ F L TI+++ V L L AE
Sbjct: 187 TIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAE 245
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 27.1 bits (57), Expect = 0.20
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -1
Query: 226 SIKTKRHTLYYFFN*FVSVLFTI*KLLIDFVKNIFDNAHFLL-*TIMVNPHVMLGLQAE 53
+I+ +R TLYYFFN V + L+ F L TI+++ V L L AE
Sbjct: 187 TIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAE 245
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 27.1 bits (57), Expect = 0.20
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -1
Query: 226 SIKTKRHTLYYFFN*FVSVLFTI*KLLIDFVKNIFDNAHFLL-*TIMVNPHVMLGLQAE 53
+I+ +R TLYYFFN V + L+ F L TI+++ V L L AE
Sbjct: 255 TIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAE 313
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 27.1 bits (57), Expect = 0.20
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -1
Query: 226 SIKTKRHTLYYFFN*FVSVLFTI*KLLIDFVKNIFDNAHFLL-*TIMVNPHVMLGLQAE 53
+I+ +R TLYYFFN V + L+ F L TI+++ V L L AE
Sbjct: 255 TIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAE 313
>AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein.
Length = 602
Score = 26.2 bits (55), Expect = 0.36
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 644 GNGSPLMMPWLSSPFTSQSSVTTFNNCVVPNRTSKM 537
G P + P ++ SQS++ T V P+RTS M
Sbjct: 389 GGSFPSLYPMATTSPQSQSTIQTLRPQVSPDRTSPM 424
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 25.8 bits (54), Expect = 0.47
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -1
Query: 244 INLIFVSIKTKRHTLYYFFN 185
I++ FV I +R TLYYFFN
Sbjct: 219 IDITFVVI-IRRRTLYYFFN 237
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 23.4 bits (48), Expect = 2.5
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +2
Query: 515 GRLYVVWSSCLFCL 556
G L VVW C FC+
Sbjct: 211 GTLAVVWIMCYFCI 224
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 23.4 bits (48), Expect = 2.5
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +2
Query: 515 GRLYVVWSSCLFCL 556
G L VVW C FC+
Sbjct: 264 GTLAVVWIMCYFCI 277
>AB193550-1|BAD66824.1| 699|Apis mellifera soluble guanylyl cyclase
alpha 1 subunit protein.
Length = 699
Score = 23.0 bits (47), Expect = 3.3
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 593 QSSVTTFNNCVVPNRTSKMTRLRITFPVSVFKRL 492
+SS+ N V R ++ L + FP + KRL
Sbjct: 443 KSSIEEANLAVSAEREKNVSLLHLIFPPDIAKRL 476
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 22.6 bits (46), Expect = 4.4
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +3
Query: 480 VNLLQPFENTNW 515
V+ LQPF NT W
Sbjct: 558 VSFLQPFSNTLW 569
>AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter
transporter-1A protein.
Length = 203
Score = 22.2 bits (45), Expect = 5.8
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +2
Query: 515 GRLYVVWSSCLFCL 556
G L +VW C FC+
Sbjct: 178 GTLLLVWILCYFCI 191
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 21.8 bits (44), Expect = 7.7
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = -3
Query: 545 SKMTRLRITFPVSVFKRLEEIHL 477
+++TRL+ P+ ++L+E+HL
Sbjct: 222 NEITRLQENSPLLDLRQLQELHL 244
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,791
Number of Sequences: 438
Number of extensions: 4411
Number of successful extensions: 23
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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