Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10j11
(808 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0174 - 22960732-22960815,22960907-22961419,22961576-229620... 60 2e-09
02_05_0440 - 29035974-29036356,29037977-29038133,29038260-290388... 34 0.15
09_03_0093 + 12311123-12311446,12312260-12312624,12312735-123130... 30 1.9
05_03_0626 - 16335816-16335917,16336331-16336558,16336694-163369... 30 1.9
09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539 30 2.5
05_03_0624 - 16319364-16320581 26 3.1
05_03_0599 + 16026042-16027259 26 3.1
05_05_0220 + 23380290-23381581,23381997-23383458 29 3.3
06_02_0188 - 12810330-12811874 29 4.4
03_06_0468 + 34153425-34153823 29 4.4
03_01_0467 + 3608250-3608541,3609276-3609356,3609909-3610069 29 4.4
02_01_0106 - 780984-781279,781355-781578,781684-781920,782023-78... 29 4.4
07_03_1177 - 24574682-24574852,24575047-24575618,24575711-245760... 28 7.6
05_01_0192 + 1394342-1396645 28 7.6
>05_05_0174 - 22960732-22960815,22960907-22961419,22961576-22962058,
22964191-22964673
Length = 520
Score = 60.1 bits (139), Expect = 2e-09
Identities = 70/272 (25%), Positives = 114/272 (41%), Gaps = 37/272 (13%)
Frame = -3
Query: 791 TTKHNLQWEGXVRETAAXSKTTSFKVRESSGPQMKSILRHIVTVDHRDDAIFPSQGSWVQ 612
T +H+L + R S+ +S +R G + S L++ +D R+ + P++G
Sbjct: 244 TMQHDLSYNLTWRTLTDPSQVSSKSIRRQLGHNLLSALKYTYKIDQRNSHLRPTKGYAFL 303
Query: 611 FSSELAGL--GGGVAHLKTELQAQQNYEL-IEDIVLQLAGAAGVLHDM------FGTEIP 459
+S++ GL G+ + E + L + L + G + + + +P
Sbjct: 304 STSQVGGLWDSKGLRFFRQEFDVRGAVPLGFYNSALNVGLGVGAILPLGRGFMNLSSSVP 363
Query: 458 DHFFLGGPTT----------LRGFQQRGVGP----------HSDGQATG-GKVYWAAGAH 342
D F+LGG ++ L GF+ RG+GP DG A G+ Y
Sbjct: 364 DRFYLGGHSSPVCSLSGLSSLLGFRTRGIGPTEPRRLVPSESEDGSAASPGRDYLGGDLA 423
Query: 341 V--YAPLPF-LRNKNGISSLFRSHFFVNAGCLAAPDNG----LTNWEWANSARVSCGAGV 183
V +A L F L K + H F+ AG LA G + E+ + R S G G+
Sbjct: 424 VSAFADLSFDLPLKIFRDAGIHGHAFLTAGNLAKLSEGEYKKFSLSEFGRTFRSSAGVGI 483
Query: 182 ALRLGSVARLELNYCAPLKARTNDCTAHGLQF 87
L + R+E+NYC LK +D G+QF
Sbjct: 484 ILPT-KLFRVEVNYCYILKQAEHDSGRTGIQF 514
>02_05_0440 -
29035974-29036356,29037977-29038133,29038260-29038824,
29038866-29039191
Length = 476
Score = 33.9 bits (74), Expect = 0.15
Identities = 36/111 (32%), Positives = 48/111 (43%), Gaps = 7/111 (6%)
Frame = +1
Query: 367 FPPVACPSECGPTPRCWKPLSVVGPPRKK*SGISVPNMSCRTPAAPASCNTMSSINS*FC 546
FP CP+ GP+ C P S G R IS SCRTP APA+ + SS
Sbjct: 56 FPCSRCPT--GPSTACQTPPS--GGCRS----ISTATSSCRTPRAPAASGSSSS------ 101
Query: 547 CAWSSVLRW--ATPP-----PNPASSLLNCTQEP*LGKIASSRWSTVTMCR 678
A ++ RW PP P P L+ C+ + + R S + +CR
Sbjct: 102 -AATARTRWMPTDPPVTHDTPPPLQKLVVCSPTL-VAAVVGKRPSQLLLCR 150
>09_03_0093 +
12311123-12311446,12312260-12312624,12312735-12313004,
12313100-12313664
Length = 507
Score = 30.3 bits (65), Expect = 1.9
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Frame = -3
Query: 668 VTVDHRDDAIFPSQGSWVQFSSELAGLGGGVAHL---KTELQAQQNYELIEDIVLQLAGA 498
+ D DD + W+Q +S + + GG + L T + + + + +V ++ A
Sbjct: 130 LVADSTDDGNRGAAFGWLQLTSSIGSIIGGFSALLLASTTVLGVEGWRVAFHLVAAISVA 189
Query: 497 AGVLHDMFGTEIPDHFFLGGPTTLRGFQQRG 405
GVL +F + HF G P G +RG
Sbjct: 190 VGVLVWLFA--VDPHFPAGAPGDGGGGGRRG 218
>05_03_0626 -
16335816-16335917,16336331-16336558,16336694-16336973,
16337596-16338560
Length = 524
Score = 30.3 bits (65), Expect = 1.9
Identities = 25/73 (34%), Positives = 31/73 (42%)
Frame = +1
Query: 370 PPVACPSECGPTPRCWKPLSVVGPPRKK*SGISVPNMSCRTPAAPASCNTMSSINS*FCC 549
PP PS P C PLS PP + G+ V P AP +S + F
Sbjct: 88 PPTIFPSP-PPARHCSTPLSPSSPPFQP-RGLLV---RWAPPPAPRCSTPLSPYSPPFRP 142
Query: 550 AWSSVLRWATPPP 588
A ++RWA PPP
Sbjct: 143 A-RLIVRWARPPP 154
>09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539
Length = 1908
Score = 29.9 bits (64), Expect = 2.5
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +3
Query: 120 PGLQRRAVV-QLEPRHAAQPQRDAGAARHARGIRPFPIR*TIIGRRQTAGVHEEMRPEQG 296
PG+ R + +L R A+P R R A G + F IR + + + E + PE
Sbjct: 683 PGVPREVIEHRLAVRPGARPVRQK-VRRQAPGRQAF-IREEVARLLEAGFIREVIHPEWL 740
Query: 297 RNPVFVPKEGQR 332
NPV VPK +
Sbjct: 741 ANPVVVPKANSK 752
>05_03_0624 - 16319364-16320581
Length = 405
Score = 26.2 bits (55), Expect(2) = 3.1
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +1
Query: 370 PPVACPSECGPTPRCWKPLSVVGPP 444
PP PS P PRC PLS PP
Sbjct: 201 PPSILPSLL-PAPRCSTPLSPSSPP 224
Score = 21.8 bits (44), Expect(2) = 3.1
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = +1
Query: 562 VLRWATPPP 588
++RWA PPP
Sbjct: 231 IVRWARPPP 239
>05_03_0599 + 16026042-16027259
Length = 405
Score = 26.2 bits (55), Expect(2) = 3.1
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +1
Query: 370 PPVACPSECGPTPRCWKPLSVVGPP 444
PP PS P PRC PLS PP
Sbjct: 201 PPSILPSLL-PAPRCSTPLSPSSPP 224
Score = 21.8 bits (44), Expect(2) = 3.1
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = +1
Query: 562 VLRWATPPP 588
++RWA PPP
Sbjct: 231 IVRWARPPP 239
>05_05_0220 + 23380290-23381581,23381997-23383458
Length = 917
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 421 PLSVVGPPRKK*SGISVPNMSCRTPAAPASCNTMSSIN 534
PL PPR + +S ++S PAA ASC ++ S+N
Sbjct: 107 PLPDALPPRARALDLSANSLSGYLPAALASCGSLVSLN 144
>06_02_0188 - 12810330-12811874
Length = 514
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/55 (32%), Positives = 23/55 (41%)
Frame = +3
Query: 108 AVVGPGLQRRAVVQLEPRHAAQPQRDAGAARHARGIRPFPIR*TIIGRRQTAGVH 272
A +GP V P H A QR A A RG+ P + T GR ++ H
Sbjct: 76 APLGPSRPTIFVAARGPAHRALVQRGAAFASRPRGVSPASVLLTSGGRNVSSAQH 130
>03_06_0468 + 34153425-34153823
Length = 132
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +1
Query: 70 KCTPSPNWRPCAVQSLVRAFSGAQ*FSSSRATLPSRSATPAPHDTRA 210
+C P R C L GA+ S+ A PS +A AP D A
Sbjct: 78 QCRPEHGHRACHTTPLTNVAGGARIRPSATAAPPSAAAVAAPADDTA 124
>03_01_0467 + 3608250-3608541,3609276-3609356,3609909-3610069
Length = 177
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = +1
Query: 376 VACPSECGPT----PRCWKPLSVVGPPRKK*SGISVPNMSCRTPAAPASCNTMSSINS 537
+A PS CG T C + L + PP K + I P +PAAPA N+ ++ +S
Sbjct: 80 LALPSACGATHANVSHCPQLLHI--PPNSKDAAIFSPGGDKGSPAAPAKDNSTTTTDS 135
>02_01_0106 -
780984-781279,781355-781578,781684-781920,782023-782126
Length = 286
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/67 (26%), Positives = 28/67 (41%)
Frame = +1
Query: 400 PTPRCWKPLSVVGPPRKK*SGISVPNMSCRTPAAPASCNTMSSINS*FCCAWSSVLRWAT 579
PT R K + V+ PP GIS+ + R C+ + N C +S W++
Sbjct: 48 PTTRSLKIMQVIEPPCSSREGISIETLDKRL-FLLGGCSWLKDANDEVFCYDASSNCWSS 106
Query: 580 PPPNPAS 600
P P +
Sbjct: 107 VAPMPTA 113
>07_03_1177 -
24574682-24574852,24575047-24575618,24575711-24576068,
24576108-24576152
Length = 381
Score = 28.3 bits (60), Expect = 7.6
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +3
Query: 69 EVHSEPELEAVRGAVVGPGLQRRAVVQLEPRHAAQPQRDAGAARHARGIRPFP 227
EV S+ L+ +R VVG G + VV + D A HARG++ P
Sbjct: 276 EVTSDEHLDYMREYVVGVGPWKDTVVPPTTDNKLAAPTDLVARAHARGLQVHP 328
>05_01_0192 + 1394342-1396645
Length = 767
Score = 28.3 bits (60), Expect = 7.6
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = +1
Query: 370 PPVACPSECGPTPRCWKPLSVVGPPRKK*SGISVPNMSCRTPAAPASCNTMSSINS 537
PP A S P P P+ + PP+ +P +S TP+ PAS +M NS
Sbjct: 268 PPEAPVSSAAPPPASLNPM-LPSPPQ-------LPGVSTTTPSPPASTVSMPPTNS 315
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,565,516
Number of Sequences: 37544
Number of extensions: 505780
Number of successful extensions: 1760
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1756
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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