Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10j10
         (792 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-3032|AAN11679.1|  538|Drosophila melanogaster CG32201-P...    29   7.3  
AY121639-1|AAM51966.1|  313|Drosophila melanogaster LD03007p pro...    29   9.6  
AE014298-1016|AAF46242.1|  313|Drosophila melanogaster CG4615-PA...    29   9.6  

>AE014296-3032|AAN11679.1|  538|Drosophila melanogaster CG32201-PA
           protein.
          Length = 538

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 155 KWSQVI*GLLKTIVLHCKNIIILTSYMYLLQNMKCLISKVKR 280
           +WS++    ++TIVLH  + ++  S    L   KCL S   R
Sbjct: 491 RWSRLAYSYIRTIVLHIGSFLLQRSQSGFLCFRKCLASHANR 532


>AY121639-1|AAM51966.1|  313|Drosophila melanogaster LD03007p
           protein.
          Length = 313

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 149 YFSFLFLDNTSPKRGLFCMKW 87
           YF +L L+NT     LFCM+W
Sbjct: 186 YFPWLTLENTDHSAILFCMEW 206


>AE014298-1016|AAF46242.1|  313|Drosophila melanogaster CG4615-PA
           protein.
          Length = 313

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 149 YFSFLFLDNTSPKRGLFCMKW 87
           YF +L L+NT     LFCM+W
Sbjct: 186 YFPWLTLENTDHSAILFCMEW 206


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,868,673
Number of Sequences: 53049
Number of extensions: 556549
Number of successful extensions: 910
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3675273108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)