Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10j09
         (700 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical prot...    28   0.25 
AY028782-1|AAK32956.1|  501|Anopheles gambiae cytochrome P450 pr...    25   1.7  
AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal...    24   4.0  
AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    23   7.0  
AY578809-1|AAT07314.1|  358|Anopheles gambiae Sloan-Kettering In...    23   7.0  

>AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical protein
           protein.
          Length = 257

 Score = 28.3 bits (60), Expect = 0.25
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 180 EIRCVRICNKMSTRSFAAGTRAAARRPSVPPVRCALR 70
           E+ C R C++  +  FA   ++  R P VPP + + R
Sbjct: 39  EVCCSRKCSRNGSPKFAPAVQSKNRMPPVPPPKHSQR 75


>AY028782-1|AAK32956.1|  501|Anopheles gambiae cytochrome P450
           protein.
          Length = 501

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 134 NDLVDILLQIRTHLISKPTIILILFFFYSTFILFSKRVH 250
           ND     L++   +   P   ++ FFF +TF  FS+R+H
Sbjct: 196 NDPNAEFLRMGRKVFEVPRGRILKFFFMATFKDFSRRIH 234


>AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal
            growth factor receptorprotein.
          Length = 1433

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = -3

Query: 188  LVSRSGVSGFVIKCQPGRSQPAHAQLPVGPPYLQ*GAP 75
            L S SG  G     QPG +   H Q P  PP    G P
Sbjct: 1363 LSSASGSIGPKSADQPGAAAGLHHQQPSSPPTQTIGIP 1400


>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 433 FLLIGNLLLPTSLTITL 383
           FLL+  ++ PTSLT+ L
Sbjct: 285 FLLLAEIIPPTSLTVPL 301


>AY578809-1|AAT07314.1|  358|Anopheles gambiae Sloan-Kettering
           Institute proto-oncogeneproduct protein.
          Length = 358

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -1

Query: 181 RDQVCPDL**NVNQVVRSRHTRSCPSALRTSSEVRP 74
           R  + PD   +   + R+   R C S L  + E+RP
Sbjct: 177 RANIIPDTAKSCGLITRTNAERLCSSLLHQAHELRP 212


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 739,698
Number of Sequences: 2352
Number of extensions: 16878
Number of successful extensions: 27
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71086350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)