Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10j09
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82282-6|CAB05273.1|  147|Caenorhabditis elegans Hypothetical pr...    31   1.0  
U53332-2|AAK31532.1|  473|Caenorhabditis elegans Tetraspanin fam...    30   1.8  
U00031-2|AAT92090.1|  377|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z79600-8|CAJ85760.1|  147|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF039713-3|AAM81096.1|   56|Caenorhabditis elegans Hypothetical ...    28   7.4  
AC006722-1|AAK68420.1|  401|Caenorhabditis elegans Hypothetical ...    28   7.4  
AC006645-6|AAF39847.1|  462|Caenorhabditis elegans Hypothetical ...    28   7.4  
Z72505-1|CAA96608.1|  338|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z69634-10|CAA93457.2|  431|Caenorhabditis elegans Hypothetical p...    27   9.8  
Z68507-8|CAA92831.2|  431|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z82282-6|CAB05273.1|  147|Caenorhabditis elegans Hypothetical
           protein T07G12.8 protein.
          Length = 147

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +2

Query: 164 RTHLISKPTIILILFFFYSTFILFSKRVHQI*VTVEYIYAYKEYTPFAKN 313
           R   I KP  I I+F+F+S FILF  ++ +I +  + +   +++   A N
Sbjct: 37  RVICIDKPVPIRIIFYFFSNFILFFYKI-KIFMNYQLLLRNRKFQYMANN 85


>U53332-2|AAK31532.1|  473|Caenorhabditis elegans Tetraspanin family
           protein 18 protein.
          Length = 473

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -2

Query: 660 LTLLRICSIYFQF*FYYSQKN---YVNGHTEDIAL*LLVTSYMICVFGH 523
           L L  +C + F F    SQ++   +VN  T  I++ LL  S+M+CV  +
Sbjct: 71  LVLCSVCLLIFVFDVATSQESEAFHVNLKTYSISIYLLCVSFMVCVLSY 119


>U00031-2|AAT92090.1|  377|Caenorhabditis elegans Hypothetical
           protein B0361.5b protein.
          Length = 377

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -3

Query: 521 ALSKKQLEKLSGFTISLLSFGMTTLIGMVFLTDWKPVVTYIPYYN 387
           A  KK+   +   ++S L  G  + +G +F  DW+ +V    YY+
Sbjct: 51  ASQKKKRSWVKWLSVSTLIIGGASYVGYLFTPDWREIVDSKHYYS 95


>Z79600-8|CAJ85760.1|  147|Caenorhabditis elegans Hypothetical
           protein F59C6.14a protein.
          Length = 147

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 22/80 (27%), Positives = 36/80 (45%)
 Frame = -3

Query: 479 ISLLSFGMTTLIGMVFLTDWKPVVTYIPYYNTKFEEVKKKEC*IVFWAGRLAALSYFLRR 300
           I ++SFG     G + L+     VT IP  +  +  +        +W G  A + Y L  
Sbjct: 24  IIIISFGAGWTQGRMNLSIDYDEVTEIPGASPPYSRLIPYPAHADWWFGLTAVMIYLLLV 83

Query: 299 ACTLYRHIYTLLLLKFGARV 240
            CTLY  I+T++ +    R+
Sbjct: 84  VCTLYM-IWTVIQIVMPNRI 102


>AF039713-3|AAM81096.1|   56|Caenorhabditis elegans Hypothetical
           protein F57B10.14 protein.
          Length = 56

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -3

Query: 467 SFGMTTLIGMVFLTDWKPVVTYIPYYNTKFEE 372
           ++G +  +  ++  +WK V  YIP +N ++ E
Sbjct: 25  AYGGSAFLLAIYFCEWKTVGQYIPLWNKRYVE 56


>AC006722-1|AAK68420.1|  401|Caenorhabditis elegans Hypothetical
           protein Y19D10A.7 protein.
          Length = 401

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +1

Query: 445 IRVVIPNDNNEIVNPLNFSNCFLLSAMTEY 534
           +  ++ N+N++I++P NF NC L+ A  +Y
Sbjct: 324 LTAIMLNNNSDILSP-NFKNCDLIHAQFKY 352


>AC006645-6|AAF39847.1|  462|Caenorhabditis elegans Hypothetical
           protein F56A4.9 protein.
          Length = 462

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +1

Query: 445 IRVVIPNDNNEIVNPLNFSNCFLLSAMTEY 534
           +  ++ N+N++I++P NF NC L+ A  +Y
Sbjct: 369 LTAIMLNNNSDILSP-NFKNCDLIHAQFKY 397


>Z72505-1|CAA96608.1|  338|Caenorhabditis elegans Hypothetical
           protein C50C10.2 protein.
          Length = 338

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/40 (22%), Positives = 23/40 (57%)
 Frame = -3

Query: 686 TWCNSIDLS*LFYVFVQFIFNSNFTIVRKTMLMVIQKILL 567
           +WC  I  + LF  F+ F++ SN+ ++    ++ + ++ +
Sbjct: 96  SWCADIQPNRLFAAFIVFVYASNYGVMICPFMVCLMRMTI 135


>Z69634-10|CAA93457.2|  431|Caenorhabditis elegans Hypothetical
           protein M18.8 protein.
          Length = 431

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -3

Query: 476 SLLSFGMTTLIGMV---FLTDWKPVVTYIPYYNT 384
           ++ +F   T+IG V   F   W PV +Y+  +NT
Sbjct: 32  TIFAFSTITMIGAVTTFFALQWMPVTSYMGLFNT 65


>Z68507-8|CAA92831.2|  431|Caenorhabditis elegans Hypothetical
           protein M18.8 protein.
          Length = 431

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -3

Query: 476 SLLSFGMTTLIGMV---FLTDWKPVVTYIPYYNT 384
           ++ +F   T+IG V   F   W PV +Y+  +NT
Sbjct: 32  TIFAFSTITMIGAVTTFFALQWMPVTSYMGLFNT 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,145,564
Number of Sequences: 27780
Number of extensions: 357917
Number of successful extensions: 926
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)