Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10j08
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    41   3e-04
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    28   2.0  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    26   6.1  
SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces po...    26   8.0  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    26   8.0  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    26   8.0  

>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -2

Query: 776 YYACGTSTDWSYAIAKIPYSYMIELRSK-KYRFKLPKDQIMETCKEILSAVKSLMEFI 606
           +Y  GT+ DW Y  A + + + I LR    Y + LP  QI+ T KE  + +    EFI
Sbjct: 435 HYLPGTAIDWVYFAADVAWPFNIRLRDMGDYGYLLPAKQIVPTAKEFFAMILYYGEFI 492


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 456 WDPLDF-SSRLLFAKDALLVLKQFNRE 533
           W  L+F SSR  FA+++L  LK FN++
Sbjct: 609 WQVLEFLSSRCEFARESLNYLKSFNKQ 635


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 737 IAKIPYSYMIELRSKKYRFKLPKDQIMETC 648
           I K+ Y Y+I    K+ +   PKD  ++ C
Sbjct: 300 IYKVAYDYLISPSFKEQKNPAPKDYFLDNC 329


>SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 189

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 688 YFLLLNSIMYEYGIFAIA*LQSVLVPH 768
           YFL L SI YE+  F I   +S++ P+
Sbjct: 77  YFLRLESIDYEFSEFHIIINESIVYPY 103


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = -2

Query: 722 YSYMIELRSKKYRFK--LPKDQIMETCKEILSAVKSLM 615
           +SY+++  S  Y++K  LPKD+  +     LS +KSL+
Sbjct: 140 FSYLLQSWSFLYQYKKRLPKDENQDFKIHYLSLLKSLL 177


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 541 NIVSRLNCLRTKSASFANSSREEKSNGSQAG*FTNS 434
           N VSR N    + A+ AN+     + GS+ G   NS
Sbjct: 217 NSVSRQNSRTGRGAAVANTEETNSTGGSETGGAANS 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,404,789
Number of Sequences: 5004
Number of extensions: 70845
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)