Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10j08
(870 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF098994-5|AAC67473.3| 579|Caenorhabditis elegans Hypothetical ... 47 2e-05
AF098994-4|AAO21390.1| 606|Caenorhabditis elegans Hypothetical ... 47 2e-05
AC024791-16|AAF60674.3| 468|Caenorhabditis elegans Hypothetical... 42 4e-04
AC024791-18|AAT81180.1| 438|Caenorhabditis elegans Hypothetical... 42 8e-04
AC024751-13|AAK21512.2| 488|Caenorhabditis elegans Hypothetical... 42 8e-04
Z78413-12|CAB01666.3| 448|Caenorhabditis elegans Hypothetical p... 41 0.001
Z78411-5|CAB01647.3| 448|Caenorhabditis elegans Hypothetical pr... 41 0.001
AC024791-15|ABQ13056.1| 464|Caenorhabditis elegans Hypothetical... 40 0.002
Z75714-6|CAE54930.1| 532|Caenorhabditis elegans Hypothetical pr... 38 0.009
Z75714-5|CAB00065.2| 581|Caenorhabditis elegans Hypothetical pr... 38 0.009
AF098994-3|AAT81188.1| 455|Caenorhabditis elegans Hypothetical ... 37 0.022
AF098994-2|AAT81187.1| 505|Caenorhabditis elegans Hypothetical ... 37 0.022
Z83122-4|CAB05602.2| 664|Caenorhabditis elegans Hypothetical pr... 32 0.61
Z81114-2|CAB03286.1| 604|Caenorhabditis elegans Hypothetical pr... 30 1.9
>AF098994-5|AAC67473.3| 579|Caenorhabditis elegans Hypothetical
protein T06A4.1a protein.
Length = 579
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Frame = -2
Query: 797 GAQRDMTYYACGTSTDWSYAIAKIPYSYMIELRSKK----YRFKLPKDQIMETCKEILSA 630
G D+ Y A G S DW+ K+PY+Y+IELR K + F LP+ +I+ T E +
Sbjct: 368 GTGADLMYEASGGSHDWAKGQLKVPYAYLIELRPKNTMMGHGFLLPEREIVPTGLETFES 427
Query: 629 VK 624
+K
Sbjct: 428 IK 429
>AF098994-4|AAO21390.1| 606|Caenorhabditis elegans Hypothetical
protein T06A4.1b protein.
Length = 606
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Frame = -2
Query: 797 GAQRDMTYYACGTSTDWSYAIAKIPYSYMIELRSKK----YRFKLPKDQIMETCKEILSA 630
G D+ Y A G S DW+ K+PY+Y+IELR K + F LP+ +I+ T E +
Sbjct: 368 GTGADLMYEASGGSHDWAKGQLKVPYAYLIELRPKNTMMGHGFLLPEREIVPTGLETFES 427
Query: 629 VK 624
+K
Sbjct: 428 IK 429
>AC024791-16|AAF60674.3| 468|Caenorhabditis elegans Hypothetical
protein Y47G6A.19a protein.
Length = 468
Score = 42.3 bits (95), Expect = 4e-04
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Frame = -2
Query: 797 GAQRDMTYYACGTSTDWSYAIAKIPYSYMIELR---SKKYRFKLPKDQIMETCKEILSAV 627
G ++ Y G STDW+ KI YSY IELR + F L K+Q++ T KE + V
Sbjct: 339 GTGPEIIYAFSGGSTDWAKETLKIKYSYTIELRPGYEEWNGFVLDKNQLIPTAKETWAGV 398
Query: 626 KSLMEFIDRN*QSLVSYVSRSSRM 555
+++ + +S S SR+
Sbjct: 399 TVVLDEVTNQWKSSRVRESELSRL 422
>AC024791-18|AAT81180.1| 438|Caenorhabditis elegans Hypothetical
protein Y47G6A.19b protein.
Length = 438
Score = 41.5 bits (93), Expect = 8e-04
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = -2
Query: 797 GAQRDMTYYACGTSTDWSYAIAKIPYSYMIELR---SKKYRFKLPKDQIMETCKEILSAV 627
G ++ Y G STDW+ KI YSY IELR + F L K+Q++ T KE + V
Sbjct: 339 GTGPEIIYAFSGGSTDWAKETLKIKYSYTIELRPGYEEWNGFVLDKNQLIPTAKETWAGV 398
Query: 626 KSLME 612
+++
Sbjct: 399 TVVLD 403
>AC024751-13|AAK21512.2| 488|Caenorhabditis elegans Hypothetical
protein Y18H1A.9 protein.
Length = 488
Score = 41.5 bits (93), Expect = 8e-04
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = -2
Query: 803 K*GAQRDMTYYACGTSTDWSYAIAKIPYSYMIELRSKKY---RFKLPKDQIMETCKEILS 633
K G D Y A G S DW+ A + YS++ ELR ++ F L ++QI+ T +E
Sbjct: 371 KVGTGADTLYPASGGSEDWAKGKAHVKYSFLFELRPEEQVWDGFLLAENQIIPTARETWE 430
Query: 632 AVK 624
AVK
Sbjct: 431 AVK 433
>Z78413-12|CAB01666.3| 448|Caenorhabditis elegans Hypothetical
protein F02D8.4 protein.
Length = 448
Score = 41.1 bits (92), Expect = 0.001
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = -2
Query: 785 DMTYYACGTSTDWSYAIAKIPYSYMIELR--SKKYRFKLPKDQIMETCKEILSAVKSLM 615
D Y A G S DW+ + I YSY IEL F LP+D+I + C+E A++ LM
Sbjct: 350 DGLYPAAGASDDWAKSRG-IKYSYTIELSPIDDFTGFSLPEDRINQVCREAFQAIQVLM 407
>Z78411-5|CAB01647.3| 448|Caenorhabditis elegans Hypothetical
protein F02D8.4 protein.
Length = 448
Score = 41.1 bits (92), Expect = 0.001
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = -2
Query: 785 DMTYYACGTSTDWSYAIAKIPYSYMIELR--SKKYRFKLPKDQIMETCKEILSAVKSLM 615
D Y A G S DW+ + I YSY IEL F LP+D+I + C+E A++ LM
Sbjct: 350 DGLYPAAGASDDWAKSRG-IKYSYTIELSPIDDFTGFSLPEDRINQVCREAFQAIQVLM 407
>AC024791-15|ABQ13056.1| 464|Caenorhabditis elegans Hypothetical
protein Y47G6A.19c protein.
Length = 464
Score = 39.9 bits (89), Expect = 0.002
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Frame = -2
Query: 767 CGTSTDWSYAIAKIPYSYMIELR---SKKYRFKLPKDQIMETCKEILSAVKSLMEFIDRN 597
CG STDW+ KI YSY IELR + F L K+Q++ T KE + V +++ +
Sbjct: 346 CG-STDWAKETLKIKYSYTIELRPGYEEWNGFVLDKNQLIPTAKETWAGVTVVLDEVTNQ 404
Query: 596 *QSLVSYVSRSSRM 555
+S S SR+
Sbjct: 405 WKSSRVRESELSRL 418
>Z75714-6|CAE54930.1| 532|Caenorhabditis elegans Hypothetical
protein ZC434.9b protein.
Length = 532
Score = 37.9 bits (84), Expect = 0.009
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = -2
Query: 803 K*GAQRDMTYYACGTSTDWSYAIAKIPYSYMIELRSKK---YRFKLPKDQIMETCKEILS 633
K G D+ Y + G S DW+ +I Y Y++ELR + F L + Q++ T KE +
Sbjct: 394 KFGTGSDILYPSAGGSDDWAKGTLRIKYVYLLELRPGEDVWDGFILDQHQLIPTAKETWN 453
Query: 632 AVKSLMEFI 606
+K ++ +
Sbjct: 454 GIKVVIRAV 462
>Z75714-5|CAB00065.2| 581|Caenorhabditis elegans Hypothetical
protein ZC434.9a protein.
Length = 581
Score = 37.9 bits (84), Expect = 0.009
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = -2
Query: 803 K*GAQRDMTYYACGTSTDWSYAIAKIPYSYMIELRSKK---YRFKLPKDQIMETCKEILS 633
K G D+ Y + G S DW+ +I Y Y++ELR + F L + Q++ T KE +
Sbjct: 394 KFGTGSDILYPSAGGSDDWAKGTLRIKYVYLLELRPGEDVWDGFILDQHQLIPTAKETWN 453
Query: 632 AVKSLMEFI 606
+K ++ +
Sbjct: 454 GIKVVIRAV 462
>AF098994-3|AAT81188.1| 455|Caenorhabditis elegans Hypothetical
protein T06A4.3b protein.
Length = 455
Score = 36.7 bits (81), Expect = 0.022
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = -2
Query: 797 GAQRDMTYYACGTSTDWSYAIAKIPYSYMIELRSKKYR---FKLPKDQIMETCKEILSAV 627
G+ D Y A G S DW+ AK+ + Y++ELR + F L + +++ T +E V
Sbjct: 372 GSGADTLYPASGGSEDWAKHEAKVKFVYLLELRPDEKNWDGFILDEKELIPTARETWEGV 431
Query: 626 KSLMEFI 606
+ + E +
Sbjct: 432 RVVAEAV 438
>AF098994-2|AAT81187.1| 505|Caenorhabditis elegans Hypothetical
protein T06A4.3a protein.
Length = 505
Score = 36.7 bits (81), Expect = 0.022
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = -2
Query: 797 GAQRDMTYYACGTSTDWSYAIAKIPYSYMIELRSKKYR---FKLPKDQIMETCKEILSAV 627
G+ D Y A G S DW+ AK+ + Y++ELR + F L + +++ T +E V
Sbjct: 372 GSGADTLYPASGGSEDWAKHEAKVKFVYLLELRPDEKNWDGFILDEKELIPTARETWEGV 431
Query: 626 KSLMEFI 606
+ + E +
Sbjct: 432 RVVAEAV 438
>Z83122-4|CAB05602.2| 664|Caenorhabditis elegans Hypothetical
protein R11A5.7 protein.
Length = 664
Score = 31.9 bits (69), Expect = 0.61
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = -2
Query: 797 GAQRDMTYYACGTSTDWSYAIAKIPYSYMIELRSK---KYRFKLPKDQIMETCKEILSAV 627
G D A G S DW+ + + Y Y+IELR + F L K +++ T E
Sbjct: 407 GTGADTLSPAAGGSDDWAKSALNVKYVYLIELRPQMELSNGFILHKKELIPTAVETFEGF 466
Query: 626 KSLMEFI 606
+ +++ +
Sbjct: 467 REVVDAV 473
>Z81114-2|CAB03286.1| 604|Caenorhabditis elegans Hypothetical
protein T04D3.2 protein.
Length = 604
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/72 (23%), Positives = 34/72 (47%)
Frame = +3
Query: 522 FNRETIFYQLLHSRTPTDITH*ALLISINKFHQTFDGAKNFLASLHNLVFG*FESVFFAP 701
+N T + + ++T +L+ ++FHQ G K ++ +HNL E ++
Sbjct: 319 YNDHTGNFDFYQGTSKFEVTEDSLVAKYSEFHQ---GLKKYVFHVHNLESNLMEKYYYQA 375
Query: 702 QFNHVRIWDLCN 737
+FN + + CN
Sbjct: 376 EFNSL-VQTHCN 386
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,450,365
Number of Sequences: 27780
Number of extensions: 388094
Number of successful extensions: 844
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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