Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10j07
         (831 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0031 - 12477787-12478413,12480182-12480268,12480371-124805...    29   3.4  
06_03_0223 - 18391177-18391287,18391570-18392081,18392200-183930...    29   3.4  
08_02_1577 + 27985066-27985434,27985520-27985594,27986159-279863...    28   7.9  
06_03_0225 - 18413668-18413751,18414641-18415493,18417497-18417516     28   7.9  

>12_02_0031 -
           12477787-12478413,12480182-12480268,12480371-12480562,
           12480638-12480766,12480840-12480926,12483076-12483537,
           12485088-12485222
          Length = 572

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +1

Query: 595 HQRLY*LKKKMYFIMSSKYVIITFLKIAYRILFLYISKYVEYTKIKMFIIKCTHI 759
           HQ L  L+ +M++       I+  + + YR++F  I K  E  + KM  +KC+ I
Sbjct: 518 HQVLEALQVEMWYSKWVNLAILFGMAVIYRMMFFAIVKVAEGIRPKMRRMKCSLI 572


>06_03_0223 -
           18391177-18391287,18391570-18392081,18392200-18393019,
           18393603-18393671,18393973-18394062,18395381-18395575
          Length = 598

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +3

Query: 339 AKREIKSLLFYGLIVLRLAKVYREDRYNVINSISGHQSMEQTTNM 473
           AK++ K  L   +++L+   +  +D+  V NSI+ H S  Q TNM
Sbjct: 137 AKKDSKRRLVRWILLLQEFDIEIKDKKRVENSIADHLSRMQITNM 181


>08_02_1577 +
           27985066-27985434,27985520-27985594,27986159-27986320,
           27986415-27986590,27986681-27986756,27987154-27987282,
           27987363-27987482,27987734-27987815,27988016-27988110,
           27988427-27988491,27988604-27988802,27989426-27989620,
           27989866-27989960,27990059-27990194,27990265-27990482,
           27990729-27990856,27991148-27991617
          Length = 929

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 10/43 (23%), Positives = 26/43 (60%)
 Frame = +3

Query: 369 YGLIVLRLAKVYREDRYNVINSISGHQSMEQTTNMSLIRSPVR 497
           YG+   ++A + RED+ +++  ++GH +  +   M+   +P++
Sbjct: 539 YGIDEKKVASLVREDKVDILVELTGHTANNKLGTMACRPAPIQ 581


>06_03_0225 - 18413668-18413751,18414641-18415493,18417497-18417516
          Length = 318

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 342 KREIKSLLFYGLIVLRLAKVYREDRYNVINSISGHQSMEQTTNM 473
           K++ K  L   +++L+   +  +D+  V NSI+ H S  Q TNM
Sbjct: 30  KKDSKRRLIKWILLLQEFDIEIKDKKRVENSIADHLSRMQITNM 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,026,907
Number of Sequences: 37544
Number of extensions: 315090
Number of successful extensions: 567
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)