Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10j07
         (831 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.        26   0.37 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   2.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   2.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.6  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   6.0  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    22   6.0  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   6.0  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   6.0  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    22   6.0  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              22   8.0  

>AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.
          Length = 62

 Score = 26.2 bits (55), Expect = 0.37
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +2

Query: 221 IFQILNFKWLSGTIAKNSLKPNNLLPVDIISDVSN 325
           +F +    ++SGT + + ++P+ LLP D++   SN
Sbjct: 21  MFYVHEGAFISGTSSFHEMRPDYLLPKDVVVVSSN 55


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = -2

Query: 203 VFSYLNELNLIEVQLKTFELLILMLNKTDLYLQR*MSRSFSSLNIMI 63
           VF  L  L+L  +QL+ FE+ I    K ++++   ++ S  SL ++I
Sbjct: 250 VFIGLQSLSLTNIQLEHFEMKI--KRKHNVFVNNILAASACSLFVVI 294


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 104 FVSKGPFYLALVLTIRMFSIELQLSLIH 187
           +VS+   Y++ VLTI  FSIE  L++ H
Sbjct: 112 YVSETSSYVS-VLTIVAFSIERYLAIYH 138


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 509 LVELSNWGSDKAH 471
           L ELS+W SD AH
Sbjct: 933 LQELSSWVSDNAH 945


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 230 ILNFKWLSGTIAKNSLKPNNLLPVDIISDV 319
           ++N K  S TI +NS +   ++P ++ SDV
Sbjct: 545 VVNLKSGSNTIERNSHESVFVVPDEVPSDV 574


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 798 KPEIMILVQEM*DNVGAFNYKHL 730
           KPEI +L++   D  GA+   +L
Sbjct: 97  KPEIWVLLEAKYDPTGAYKQHYL 119


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 230 ILNFKWLSGTIAKNSLKPNNLLPVDIISDV 319
           ++N K  S TI +NS +   ++P ++ SDV
Sbjct: 545 VVNLKSGSNTIERNSHESVFVVPDEVPSDV 574


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +3

Query: 255 VQLQKIRLNQITFYPSILFPMFPIQR 332
           V ++K+++  + FY SI+F M  + +
Sbjct: 14  VLVKKVKIVLLIFYGSIMFSMTQVNK 39


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 798 KPEIMILVQEM*DNVGAFNYKHL 730
           KPEI +L++   D  GA+   +L
Sbjct: 97  KPEIWVLLEAKYDPTGAYKQHYL 119


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 123 NGPLLTKINVA*LFIPQYNDNEKTLNF 43
           NG  L+  N+A +   QY+D+E    F
Sbjct: 83  NGSELSTYNIAGIIEGQYHDDEDLKTF 109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,609
Number of Sequences: 438
Number of extensions: 4434
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)