Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10j06
         (835 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    24   1.5  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   6.1  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   6.1  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -3

Query: 515 EELSEHKT-RATISEYLLIRTFIESDIQNVCKLIYFFHDTFLPNNRHNLTANSIWKTIFF 339
           +E S  +T R    E  +I +     I N     Y +++    NN +N   N+  K +++
Sbjct: 297 KERSRDRTERERSREPKIISSLSNKTIHNNNNYKYNYNNNNYNNNNYNNNYNNNCKKLYY 356

Query: 338 NLI 330
           N+I
Sbjct: 357 NII 359


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 10/48 (20%), Positives = 22/48 (45%)
 Frame = -3

Query: 311 QSNLIVIHKPRCTNWTSTLKLEKDRLPQWKSTECPSIMQSCLDITLTR 168
           +S++    + +C   T   K   D+L +W +T  P      ++I + +
Sbjct: 64  KSHITEAFQTQCKKCTEIQKQNLDKLAEWFTTNEPEKWNHFVEIMIKK 111


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 10/48 (20%), Positives = 22/48 (45%)
 Frame = -3

Query: 311 QSNLIVIHKPRCTNWTSTLKLEKDRLPQWKSTECPSIMQSCLDITLTR 168
           +S++    + +C   T   K   D+L +W +T  P      ++I + +
Sbjct: 64  KSHITEAFQTQCKKCTEIQKQNLDKLAEWFTTNEPEKWNHFVEIMIKK 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,734
Number of Sequences: 438
Number of extensions: 4057
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)