Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10j02
(404 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_03_0036 - 7286425-7286463,7286686-7286974,7287306-7288192,728... 30 0.61
10_07_0096 - 12825556-12825594,12825700-12825738,12825824-128261... 30 0.80
09_01_0065 - 976726-976764,976870-976908,976994-977282,977614-97... 30 0.80
07_03_0528 + 19086835-19087363,19087514-19087539,19087753-190880... 30 0.80
11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,223... 29 1.1
03_05_0860 + 28345120-28345266,28345376-28345424,28345519-283456... 29 1.4
01_05_0008 - 17063377-17063813,17064937-17065052,17065284-170657... 28 2.4
07_01_1100 + 10097044-10097949,10098074-10098274,10098796-100989... 28 3.2
07_03_0685 - 20679883-20679927,20680034-20680087,20680179-206803... 27 5.6
05_05_0359 + 24393254-24393260,24393952-24394163,24394243-243942... 27 5.6
01_06_0992 - 33644712-33644726,33644769-33644822,33644915-336451... 27 5.6
01_05_0333 + 21064693-21066006 27 7.5
07_03_1275 + 25382959-25383765,25383850-25384050,25384693-253848... 26 9.9
06_01_0664 + 4850445-4850879,4853155-4854186 26 9.9
>10_03_0036 -
7286425-7286463,7286686-7286974,7287306-7288192,
7288280-7288726,7288805-7288830,7288984-7289512
Length = 738
Score = 30.3 bits (65), Expect = 0.61
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +3
Query: 144 FDIFKLASVQVNTKSCFFV*YQITIAITSRPSTCITHFVN 263
FD+++L +V + C+ + I + IT + STC H++N
Sbjct: 612 FDLYRLRAVDTSLPKCYSFAHWILLVITPKWSTC--HYLN 649
>10_07_0096 -
12825556-12825594,12825700-12825738,12825824-12826112,
12826444-12826955,12827067-12827336,12827423-12827869,
12827948-12828676
Length = 774
Score = 29.9 bits (64), Expect = 0.80
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +3
Query: 144 FDIFKLASVQVNTKSCFFV*YQITIAITSRPSTCITHFVN 263
FD+++L +V + C+ + I + IT + STC H++N
Sbjct: 635 FDLYRLRAVDTSLLKCYSFTHWILLVITPKWSTC--HYLN 672
>09_01_0065 -
976726-976764,976870-976908,976994-977282,977614-977819
Length = 190
Score = 29.9 bits (64), Expect = 0.80
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +3
Query: 144 FDIFKLASVQVNTKSCFFV*YQITIAITSRPSTCITHFVN 263
FD+++L +V + C+ + I + IT + STC H++N
Sbjct: 51 FDLYRLRAVDTSLLKCYSFAHWILLVITPKWSTC--HYLN 88
>07_03_0528 +
19086835-19087363,19087514-19087539,19087753-19088064,
19088152-19089038,19089370-19089658,19089744-19089782,
19089888-19089926
Length = 706
Score = 29.9 bits (64), Expect = 0.80
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +3
Query: 144 FDIFKLASVQVNTKSCFFV*YQITIAITSRPSTCITHFVN 263
FD+++L +V + C+ + I + IT + STC H++N
Sbjct: 567 FDLYRLRAVDTSLLKCYSFAHWILLVITPKWSTC--HYLN 604
>11_01_0298 -
2231063-2232015,2232124-2232798,2232918-2232946,
2233053-2233513,2233593-2233717,2233801-2234098,
2235004-2236234,2236562-2237233,2237329-2238539
Length = 1884
Score = 29.5 bits (63), Expect = 1.1
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +2
Query: 272 CRKSFEKLCSHHILCDTDASNVDSTIRLQIHCDVVRVTR 388
C +SF C++ ++ T +S+V+ R HCDVV+V +
Sbjct: 615 CGRSFLGCCNYLLVIGT-SSDVEFCARYYNHCDVVKVVQ 652
>03_05_0860 +
28345120-28345266,28345376-28345424,28345519-28345641,
28345759-28345931
Length = 163
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Frame = -1
Query: 302 ANTISQRTCDNPQIYEMGYTCGWSRCDCNGDLVLDEETGLCVDLDAC-QLKN 150
+ T C P + G CG C G+ DE C+ D C Q KN
Sbjct: 56 SRTCESDHCTTPPLLRYGKYCGILYSGCPGEQPCDELDACCMHHDNCVQAKN 107
>01_05_0008 -
17063377-17063813,17064937-17065052,17065284-17065728,
17066421-17066760
Length = 445
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 252 HFVNLWIVASPLRNCVRITSCVIRMHQTWTVRYA 353
H LW VA L+ + I S + H TW +R A
Sbjct: 156 HSFGLWFVARWLKPDLMIESGAFKGHSTWVLRQA 189
>07_01_1100 +
10097044-10097949,10098074-10098274,10098796-10098991,
10099697-10099881
Length = 495
Score = 27.9 bits (59), Expect = 3.2
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -1
Query: 395 FTFVLRGRHHNGFAGVSYC 339
FT V RGRHH F G +C
Sbjct: 198 FTVVTRGRHHCRFCGGIFC 216
>07_03_0685 -
20679883-20679927,20680034-20680087,20680179-20680390,
20680476-20680550,20683094-20683168,20686196-20686264,
20686349-20686502,20686577-20686654,20689102-20689194,
20689491-20689640,20690134-20690268,20691009-20691098,
20691412-20691453,20691796-20692053,20692131-20692207,
20693126-20693186,20693687-20693905,20694936-20695208,
20695314-20695505,20695841-20696011
Length = 840
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 221 CNGDLVLDEETGLCVDLDACQLKNV 147
CNG +V D E G + L Q KNV
Sbjct: 796 CNGTVVQDPELGQVIQLQGDQRKNV 820
>05_05_0359 +
24393254-24393260,24393952-24394163,24394243-24394296,
24394400-24394444
Length = 105
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 221 CNGDLVLDEETGLCVDLDACQLKNV 147
CNG +V D E G + L Q KNV
Sbjct: 61 CNGTVVQDPELGQVIQLQGDQRKNV 85
>01_06_0992 -
33644712-33644726,33644769-33644822,33644915-33645126,
33645436-33645472
Length = 105
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 221 CNGDLVLDEETGLCVDLDACQLKNV 147
CNG +V D E G + L Q KNV
Sbjct: 71 CNGTVVQDPELGQVIQLQGDQRKNV 95
>01_05_0333 + 21064693-21066006
Length = 437
Score = 26.6 bits (56), Expect = 7.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2
Query: 71 DCRHHCQLLDSFVTR 115
DCRH C LLD++ +R
Sbjct: 95 DCRHGCALLDAYPSR 109
>07_03_1275 +
25382959-25383765,25383850-25384050,25384693-25384888,
25385583-25385767
Length = 462
Score = 26.2 bits (55), Expect = 9.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 395 FTFVLRGRHHNGFAGVSYC 339
FT + RGRHH F G +C
Sbjct: 165 FTALTRGRHHCRFCGGIFC 183
>06_01_0664 + 4850445-4850879,4853155-4854186
Length = 488
Score = 26.2 bits (55), Expect = 9.9
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -1
Query: 341 CPRLMHPY-HTRCDANTISQRTCDNPQIYEMGYTCGWSRC 225
C R+M Y HT ++ TCD GY+C ++ C
Sbjct: 12 CSRMMENYDHTNSNSRDC---TCDKCHFLLAGYSCPYASC 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,071,412
Number of Sequences: 37544
Number of extensions: 188866
Number of successful extensions: 417
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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