Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10j02
(404 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79756-10|CAL36507.1| 80|Caenorhabditis elegans Hypothetical p... 36 0.008
U50311-12|AAA92315.1| 169|Caenorhabditis elegans Hypothetical p... 33 0.078
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 30 0.73
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr... 27 3.9
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p... 27 3.9
U29244-9|AAN60507.1| 681|Caenorhabditis elegans Eps15 (endocyto... 27 3.9
U29244-8|AAC71084.1| 751|Caenorhabditis elegans Eps15 (endocyto... 27 3.9
AY027560-1|AAK13051.1| 796|Caenorhabditis elegans EHS-1 protein. 27 3.9
AL110479-9|CAB60315.3| 583|Caenorhabditis elegans Hypothetical ... 27 3.9
U80846-2|AAC70887.3| 516|Caenorhabditis elegans Hypothetical pr... 27 5.1
AF003148-5|AAB54209.3| 792|Caenorhabditis elegans Hypothetical ... 27 5.1
Z81556-7|CAB04519.1| 569|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z49909-6|CAA90109.1| 214|Caenorhabditis elegans Hypothetical pr... 27 6.8
U80437-14|ABO52817.1| 1590|Caenorhabditis elegans Histone methyl... 27 6.8
U80437-13|ABO52816.1| 1604|Caenorhabditis elegans Histone methyl... 27 6.8
AY303579-1|AAP57301.1| 214|Caenorhabditis elegans cell death-re... 27 6.8
AF067942-7|AAG45571.2| 200|Caenorhabditis elegans Hypothetical ... 27 6.8
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 27 6.8
Z93782-3|CAB07855.1| 1294|Caenorhabditis elegans Hypothetical pr... 26 9.0
Z81484-12|CAB03973.1| 1294|Caenorhabditis elegans Hypothetical p... 26 9.0
Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical pr... 26 9.0
U80848-2|AAB37989.1| 574|Caenorhabditis elegans Hypothetical pr... 26 9.0
>Z79756-10|CAL36507.1| 80|Caenorhabditis elegans Hypothetical
protein F53C11.9 protein.
Length = 80
Score = 36.3 bits (80), Expect = 0.008
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -1
Query: 305 DANTISQRTCDNPQIYEMGYTCGWSRCDCNGDLVLDEETGLCVDLDAC 162
D + RTC+NP M +RC+C V+D T C+DL C
Sbjct: 31 DCGSPCDRTCENPN--PMCIQMCKARCECKQGFVVDSNTKKCIDLKKC 76
>U50311-12|AAA92315.1| 169|Caenorhabditis elegans Hypothetical
protein C25E10.10 protein.
Length = 169
Score = 33.1 bits (72), Expect = 0.078
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -1
Query: 281 TCDNPQIYEMGYTCGWSRCDCNGDLVLDEETGLCVDLDAC 162
TCDN E C + C C LV D TG CV+ + C
Sbjct: 93 TCDNENP-ECDLVCMTNVCQCKKGLVRDSATGKCVEKNKC 131
>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
ZK783.1 protein.
Length = 2585
Score = 29.9 bits (64), Expect = 0.73
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Frame = -1
Query: 368 HNGFAGVSYCPRLMHPYHTRCD-----ANTISQRTCDNPQIYEMGYTCGWSRCDCNGDLV 204
H+GF G + +P C+ + +C + +IY + S C+C
Sbjct: 1653 HSGFEGDGI-KKCTNPLERSCEDVEKFCGRVDHVSCLSVRIYNGSLS---SVCECEPGFR 1708
Query: 203 LDEETGLCVDLDACQ 159
++E+ CVD+D C+
Sbjct: 1709 FEKESNSCVDIDECE 1723
>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
F55H12.3 protein.
Length = 2972
Score = 27.5 bits (58), Expect = 3.9
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Frame = -1
Query: 329 MHPYHT-RCDANTISQRTCDN--PQIYEMGYTCGWSRCDCNGD---LVLDEETGLCVDLD 168
+ PY T CD T D P Y + + G+ C C+ ++LD G CVD D
Sbjct: 854 IQPYDTFECDCTT-DPNFIDPCLPHGYYVQHN-GFYSCQCDVGYKYVLLDSNVGKCVDRD 911
Query: 167 ACQLKN 150
C+ K+
Sbjct: 912 ECEEKS 917
>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
protein C39D10.7 protein.
Length = 1185
Score = 27.5 bits (58), Expect = 3.9
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -1
Query: 248 YTCGWSRC---DCNGDLVLDEETGLCVDLDACQ 159
+TC R DC GDLV ++ TG C + C+
Sbjct: 451 FTCHDGRAFANDCPGDLVFNKATGTCDFAENCE 483
>U29244-9|AAN60507.1| 681|Caenorhabditis elegans Eps15 (endocytosis
protein) homologoussequence protein 1, isoform b
protein.
Length = 681
Score = 27.5 bits (58), Expect = 3.9
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -2
Query: 241 VDGLDVIAMVIWY*TKKQDFVLTWTLANLKMSNLKNLNQESLT 113
VDG+D+ A ++ Q W LA++K NL Q +LT
Sbjct: 313 VDGMDMRAPMMTTGLSAQILAHVWALADIKKCGQLNLEQFALT 355
>U29244-8|AAC71084.1| 751|Caenorhabditis elegans Eps15 (endocytosis
protein) homologoussequence protein 1, isoform a
protein.
Length = 751
Score = 27.5 bits (58), Expect = 3.9
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -2
Query: 241 VDGLDVIAMVIWY*TKKQDFVLTWTLANLKMSNLKNLNQESLT 113
VDG+D+ A ++ Q W LA++K NL Q +LT
Sbjct: 313 VDGMDMRAPMMTTGLSAQILAHVWALADIKKCGQLNLEQFALT 355
>AY027560-1|AAK13051.1| 796|Caenorhabditis elegans EHS-1 protein.
Length = 796
Score = 27.5 bits (58), Expect = 3.9
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -2
Query: 241 VDGLDVIAMVIWY*TKKQDFVLTWTLANLKMSNLKNLNQESLT 113
VDG+D+ A ++ Q W LA++K NL Q +LT
Sbjct: 358 VDGMDMRAPMMTTGLSAQILAHVWALADIKKCGQLNLEQFALT 400
>AL110479-9|CAB60315.3| 583|Caenorhabditis elegans Hypothetical
protein Y105C5B.11 protein.
Length = 583
Score = 27.5 bits (58), Expect = 3.9
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -1
Query: 353 GVSYCPRLMHPYHTRCDANTISQRTCDNPQIYEMGY 246
G CPR YH+ C +SQ+ I+ +G+
Sbjct: 540 GTVQCPRCTEIYHSHCATQWLSQKPTCPKCIFHIGH 575
>U80846-2|AAC70887.3| 516|Caenorhabditis elegans Hypothetical
protein K06A9.2 protein.
Length = 516
Score = 27.1 bits (57), Expect = 5.1
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = -1
Query: 311 RCDANTISQRTCDNPQIYEMGYTCGWSRCDCNGDLVLDEETGLCVDLDACQLKN 150
R A+ + C P + Y G ++ +G++V + + +C+DLD LKN
Sbjct: 378 RTGASLVDSSMCLTPDNKYL-YVTGTTKRSVDGEIVFEVKP-ICLDLDTMVLKN 429
>AF003148-5|AAB54209.3| 792|Caenorhabditis elegans Hypothetical
protein F32B5.7 protein.
Length = 792
Score = 27.1 bits (57), Expect = 5.1
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 194 LRLVPNHHCNHI*TIHMYNPFRKFVDCRKSFEKLCSHHIL-CDTDASNVDSTIR 352
L ++P + + HM +P DC K K+ H +L D DS++R
Sbjct: 108 LNVIPPLDVHWVWHTHMLSPIHYQEDCEKLVGKIIDHKLLSSDEIQKRYDSSVR 161
>Z81556-7|CAB04519.1| 569|Caenorhabditis elegans Hypothetical
protein F58G1.7 protein.
Length = 569
Score = 26.6 bits (56), Expect = 6.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 234 PSTCITHFVNLWIVASPLRNCVRITSCV 317
PS I+ + L ++ PLR+ + IT C+
Sbjct: 109 PSPSISMYYQLRFLSKPLRSIITITQCI 136
>Z49909-6|CAA90109.1| 214|Caenorhabditis elegans Hypothetical
protein C14A4.5 protein.
Length = 214
Score = 26.6 bits (56), Expect = 6.8
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = -1
Query: 311 RCDANTISQRTCDNPQIYEMGYTCGWSRCDCNGDLVLDEETGLCVDLD 168
RC+ + + + D + G TC W+ C GD+ + + + LD
Sbjct: 9 RCELSFL--KNADGSACFSQGATCIWASCSGPGDVHASKASDEAMTLD 54
>U80437-14|ABO52817.1| 1590|Caenorhabditis elegans Histone
methyltransferase-likeprotein 1, isoform b protein.
Length = 1590
Score = 26.6 bits (56), Expect = 6.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 287 EKLCSHHILCDTDASNVDSTI 349
+K HH LCDT +D+T+
Sbjct: 719 DKKHKHHYLCDTGVYTIDATV 739
>U80437-13|ABO52816.1| 1604|Caenorhabditis elegans Histone
methyltransferase-likeprotein 1, isoform a protein.
Length = 1604
Score = 26.6 bits (56), Expect = 6.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 287 EKLCSHHILCDTDASNVDSTI 349
+K HH LCDT +D+T+
Sbjct: 733 DKKHKHHYLCDTGVYTIDATV 753
>AY303579-1|AAP57301.1| 214|Caenorhabditis elegans cell
death-related nuclease 5 protein.
Length = 214
Score = 26.6 bits (56), Expect = 6.8
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = -1
Query: 311 RCDANTISQRTCDNPQIYEMGYTCGWSRCDCNGDLVLDEETGLCVDLD 168
RC+ + + + D + G TC W+ C GD+ + + + LD
Sbjct: 9 RCELSFL--KNADGSACFSQGATCIWASCSGPGDVHASKASDEAMTLD 54
>AF067942-7|AAG45571.2| 200|Caenorhabditis elegans Hypothetical
protein ZK6.3 protein.
Length = 200
Score = 26.6 bits (56), Expect = 6.8
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 317 HTRCDANTISQRTCDNPQIYEMGY-TCGWSRCDCNGDL 207
H + + S + C+N Q Y+M Y C +S D NGD+
Sbjct: 135 HDKVTSIGCSYKNCENDQGYDMRYFICKYSPID-NGDM 171
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 26.6 bits (56), Expect = 6.8
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 257 EMGYTCGWSRCDCNGDLVLDEETGLC 180
E+G TC RCDCNG++ + E G C
Sbjct: 996 EVGGTC--ERCDCNGNIDMAME-GSC 1018
>Z93782-3|CAB07855.1| 1294|Caenorhabditis elegans Hypothetical
protein C47A10.1 protein.
Length = 1294
Score = 26.2 bits (55), Expect = 9.0
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 270 IVASPLRNCVRITSCVIRMHQTWTVRYACKSIVMSS 377
IV S L N R + ++ H+ TVR A K IVM +
Sbjct: 559 IVQSALENASRGRTTIVIAHRLSTVRNADKIIVMKA 594
>Z81484-12|CAB03973.1| 1294|Caenorhabditis elegans Hypothetical
protein C47A10.1 protein.
Length = 1294
Score = 26.2 bits (55), Expect = 9.0
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 270 IVASPLRNCVRITSCVIRMHQTWTVRYACKSIVMSS 377
IV S L N R + ++ H+ TVR A K IVM +
Sbjct: 559 IVQSALENASRGRTTIVIAHRLSTVRNADKIIVMKA 594
>Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical
protein B0393.5 protein.
Length = 1106
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Frame = -1
Query: 308 CDANTISQRTCDNP-QIYEMGYTCGWSRCDCNGDLVLDEETGLC 180
C + + CD G C S C C+G + D TG+C
Sbjct: 776 CPPGRLGEPLCDRECAAGHYGINCE-STCHCDGSVACDVITGMC 818
>U80848-2|AAB37989.1| 574|Caenorhabditis elegans Hypothetical
protein T10H10.2 protein.
Length = 574
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 221 NHI*TIHMYNPFRKFVDCRKSFEKLCSHHILCDTD 325
NH+ TIH + K +DC K+ E ++ + + D
Sbjct: 273 NHLQTIHFSSRKNKTIDCNKNPELCKPNYFVSEVD 307
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,136,224
Number of Sequences: 27780
Number of extensions: 181780
Number of successful extensions: 513
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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