Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10j01
         (568 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            25   2.3  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            25   2.3  
AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    25   2.3  
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    25   2.3  
EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calc...    24   4.0  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    24   4.0  
AJ439060-12|CAD27763.1|  450|Anopheles gambiae putative tachykin...    23   5.3  
AY146757-1|AAO12072.1|  246|Anopheles gambiae odorant-binding pr...    23   9.2  
AJ618928-1|CAF02007.1|  285|Anopheles gambiae odorant-binding pr...    23   9.2  

>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 8/29 (27%), Positives = 20/29 (68%)
 Frame = +2

Query: 428  PREQLSIPKIAMSTVPHFKLMQNRKLSTF 514
            P+E+L++  I ++  P ++L++  + +TF
Sbjct: 1093 PQEELTLESITVNLGPSYRLVKTHRNATF 1121


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 8/29 (27%), Positives = 20/29 (68%)
 Frame = +2

Query: 428  PREQLSIPKIAMSTVPHFKLMQNRKLSTF 514
            P+E+L++  I ++  P ++L++  + +TF
Sbjct: 1094 PQEELTLESITVNLGPSYRLVKTHRNATF 1122


>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 31  FKFLAVRVILYCLFTFQLHFILITL 105
           +KF A+ V  +CLF F L  I+ T+
Sbjct: 454 WKFAAMVVDRFCLFVFTLFTIIATV 478


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 31  FKFLAVRVILYCLFTFQLHFILITL 105
           +KF A+ V  +CLF F L  I+ T+
Sbjct: 454 WKFAAMVVDRFCLFVFTLFTIIATV 478


>EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calcium
            channel alpha1 subunit protein.
          Length = 1893

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 233  VRAVNAAAYMNHVAVCGFFMQIPIKSIMLVT 325
            +RA+N A  + HV  C       I +I+LVT
Sbjct: 962  LRAINRAKGLKHVVQCVIVAVKTIGNIVLVT 992


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 233 VRAVNAAAYMNHVAVCGFFMQIPIKSIM 316
           +R V A   ++HVAVC     +PI  I+
Sbjct: 791 MRVVRAYKTISHVAVCVIASMVPICLIL 818


>AJ439060-12|CAD27763.1|  450|Anopheles gambiae putative tachykinin
           receptor protein.
          Length = 450

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +1

Query: 19  KSFVFKFLAVRVILY--CLFTFQLHFILITLHNDYQVHP 129
           K  V K + + VI++  C   FQ++FIL + + +    P
Sbjct: 292 KRRVVKMMMIVVIIFAVCWLPFQIYFILTSYYPELTKKP 330


>AY146757-1|AAO12072.1|  246|Anopheles gambiae odorant-binding
           protein AgamOBP39 protein.
          Length = 246

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 405 GVVGEKQHRGNNSVYP 452
           G+   + H+ NNSVYP
Sbjct: 49  GICENRLHQYNNSVYP 64


>AJ618928-1|CAF02007.1|  285|Anopheles gambiae odorant-binding
           protein OBPjj83a protein.
          Length = 285

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 405 GVVGEKQHRGNNSVYP 452
           G+   + H+ NNSVYP
Sbjct: 49  GICENRLHQYNNSVYP 64


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 589,370
Number of Sequences: 2352
Number of extensions: 13154
Number of successful extensions: 23
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 53404389
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)