Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10i24
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po...    30   0.39 
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    28   1.6  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    27   2.1  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    27   2.8  
SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces pom...    27   3.6  
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr...    26   6.4  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   6.4  

>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +3

Query: 294 QASCFGSIYFCRYSINNFLDILQLIICMYFLRYVRYEIAQKYYYENSCQS*IVDVNSR 467
           Q   F    FC +S   + ++ QL++C     ++   +  ++ YE S Q+ I D+NSR
Sbjct: 72  QFDAFYEDMFCEFS--KYGEVEQLVVCDNVGDHLVGNVYVRFKYEESAQNAIDDLNSR 127


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 4/101 (3%)
 Frame = -1

Query: 410  SYLIPDVSQKIH-ANNELKDVKKVVNTITTEINRAEAACLSATDELCRLRCSVLDSTTET 234
            S+ I D     H   N     K +V  +  E   +EA     T  +      V +  TE 
Sbjct: 1707 SFSIIDNDNPFHEGQNSSTGYKDIVQGLLAENGVSEAGVDVMTSIVSSTIPIVSNHQTEG 1766

Query: 233  SNMFSDVSACQSYCMHITRSEP---MRSEKKLGFLRKIFFP 120
            S MF+++S+  S  ++   S+P   M +E       K++ P
Sbjct: 1767 SQMFNEISSVSSIHVYHDESQPPVEMPAESDTPLQNKLYHP 1807


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 147 WLSS*DILSEQKYFAQGNNNNVVCL 73
           W +S +ILSE+KYF    + N V L
Sbjct: 892 WATSVEILSERKYFVTEADGNAVIL 916


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 17/70 (24%), Positives = 28/70 (40%)
 Frame = +2

Query: 8   VITNQKRWSCLHHLLGR*RNPCRHTTLLLFPCAKYFCSERISYEESQAFFRCASVLIALC 187
           V+ N  + +C+  + G   + C+H    LFP         IS  E     R    L   C
Sbjct: 2   VVINNVKMACMKCIRGHRSSTCKHNDRELFPIRPK--GRPISQCEKCRIARITRHLHVKC 59

Query: 188 ACNNSDRQTR 217
            CN+  + ++
Sbjct: 60  TCNSRKKGSK 69


>SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 90  CYFLVRSIFVRKEYLTKKAKLFFAAH 167
           C +++R   +RKEYL +    + A H
Sbjct: 68  CSYVIRKALIRKEYLWRTVITYLAKH 93


>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = -1

Query: 272 RLRCSVLDSTTETSNMFSDVSACQSYCMHITRSEPMRSEKKLGFLRKIFFPNKNTSHKEI 93
           +L   + +S  E  ++  +    +SY + +      R++ +   L K FFP   T HK+I
Sbjct: 38  QLSIKIRESENEIQDLIQENFTLKSYLVKLEAR--FRNQSQTEDLLKNFFPEIQTIHKKI 95

Query: 92  T 90
           +
Sbjct: 96  S 96


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 153  KAWLSS*DILSEQKYFAQGNNNNVVC 76
            +A+ S  D L+E +YF  GN N   C
Sbjct: 1484 RAYYSHLDYLTEVEYFIMGNPNQNAC 1509


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,940,904
Number of Sequences: 5004
Number of extensions: 59918
Number of successful extensions: 178
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)