Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10i21
(723 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70756-10|CAI46587.1| 228|Caenorhabditis elegans Hypothetical p... 29 2.5
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 29 2.5
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 29 2.5
AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical ... 29 2.5
AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical ... 29 2.5
Z34799-2|CAA84318.1| 692|Caenorhabditis elegans Hypothetical pr... 28 5.9
U58764-3|AAB00725.1| 122|Caenorhabditis elegans Hypothetical pr... 28 7.8
U41274-5|AAA82461.2| 571|Caenorhabditis elegans Nematode astaci... 28 7.8
>Z70756-10|CAI46587.1| 228|Caenorhabditis elegans Hypothetical
protein T06E4.12 protein.
Length = 228
Score = 29.5 bits (63), Expect = 2.5
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Frame = -3
Query: 700 LVSAPAWSFGARFPSRAXTRAPGPGSHAPERC----PPMKDPRXPAYSMGARFGFAPRRA 533
+++APA++ R AP + AP P + P PA++ P A
Sbjct: 131 VLAAPAFAPAPILAPRPVLAAPAIPAFAPAPLLAPRPVLAAPAIPAFAPAPIIAPRPVLA 190
Query: 532 GPAPNAYALKLGSGSPAYTMGARVGF 455
PA A+A + + PAY AR F
Sbjct: 191 APAIPAFAPAVPAAIPAYAPFARSAF 216
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 29.5 bits (63), Expect = 2.5
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 5/113 (4%)
Frame = -3
Query: 694 SAPAWSFGARFPSRAXTRAPGPGSHAPERCP--PMKDPRXPAYSMGARFGFAPRRAGPAP 521
S+P +S PS + T +P +P+ P P P P Y+ + GF+ + P
Sbjct: 1726 SSPTYS--PTSPSYSPT-SPQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGFSSPQYSPTS 1782
Query: 520 NAYALKLGS---GSPAYTMGARVGFQAKAKSPGPAVYFQRDANVYRTKPPMYS 371
Y+ S SP Y+ + + ++ PG + + + Y P YS
Sbjct: 1783 PTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPSSPTYS 1835
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 29.5 bits (63), Expect = 2.5
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 5/113 (4%)
Frame = -3
Query: 694 SAPAWSFGARFPSRAXTRAPGPGSHAPERCP--PMKDPRXPAYSMGARFGFAPRRAGPAP 521
S+P +S PS + T +P +P+ P P P P Y+ + GF+ + P
Sbjct: 1733 SSPTYS--PTSPSYSPT-SPQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGFSSPQYSPTS 1789
Query: 520 NAYALKLGS---GSPAYTMGARVGFQAKAKSPGPAVYFQRDANVYRTKPPMYS 371
Y+ S SP Y+ + + ++ PG + + + Y P YS
Sbjct: 1790 PTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPSSPTYS 1842
>AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical
protein Y59A8B.9 protein.
Length = 187
Score = 29.5 bits (63), Expect = 2.5
Identities = 24/86 (27%), Positives = 30/86 (34%)
Frame = -3
Query: 688 PAWSFGARFPSRAXTRAPGPGSHAPERCPPMKDPRXPAYSMGARFGFAPRRAGPAPNAYA 509
PA A+ PSR R+ R P P +R APR P P A
Sbjct: 15 PAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSSAAPRATAPTPTAAP 74
Query: 508 LKLGSGSPAYTMGARVGFQAKAKSPG 431
K + +P + V A A PG
Sbjct: 75 PK--TCAPPVRSASTVAAAAAAAPPG 98
>AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical
protein Y59A8B.7 protein.
Length = 316
Score = 29.5 bits (63), Expect = 2.5
Identities = 24/86 (27%), Positives = 30/86 (34%)
Frame = -3
Query: 688 PAWSFGARFPSRAXTRAPGPGSHAPERCPPMKDPRXPAYSMGARFGFAPRRAGPAPNAYA 509
PA A+ PSR R+ R P P +R APR P P A
Sbjct: 144 PAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSSAAPRATAPTPTAAP 203
Query: 508 LKLGSGSPAYTMGARVGFQAKAKSPG 431
K + +P + V A A PG
Sbjct: 204 PK--TCAPPVRSASTVAAAAAAAPPG 227
>Z34799-2|CAA84318.1| 692|Caenorhabditis elegans Hypothetical
protein F34D10.4 protein.
Length = 692
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -3
Query: 679 SFGARFPSRAXTRAPGPGSHAPERCPPMKDPRXPAYSM 566
S GAR PSRA + R P K P PAY++
Sbjct: 381 SVGARAPSRAPAPSSTSRETRSTRRSPSKGPSAPAYTL 418
>U58764-3|AAB00725.1| 122|Caenorhabditis elegans Hypothetical
protein M03E7.2 protein.
Length = 122
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Frame = -3
Query: 604 PPMKDPRXPAYSMGARFGFAP-RRAGPAPNAYALK-LGSGSPAYTMGARVGFQAKAKSP 434
PPM P Y MG G +P GP + G G Y MG+ G + P
Sbjct: 58 PPMPPPGMSPYGMGGMGGMSPYGMMGPMGGMGGMSPYGGGMSPYGMGSMGGMGSSMSFP 116
>U41274-5|AAA82461.2| 571|Caenorhabditis elegans Nematode astacin
protease protein15 protein.
Length = 571
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 150 KLCGLLSEPPPAPAPGYRQSMVSSRMII 233
K CG +PPP P R ++V++R ++
Sbjct: 466 KSCGFCFKPPPTEIPDNRPTVVTTRPLV 493
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,257,725
Number of Sequences: 27780
Number of extensions: 291598
Number of successful extensions: 1053
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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