Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10i20
(811 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0336 + 22121913-22122111,22122295-22122344,22122538-221226... 70 3e-12
03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447 65 7e-11
04_04_0115 + 22868554-22868749,22868863-22868912,22870009-228701... 64 2e-10
04_04_0116 + 22877296-22877482,22877578-22877627,22879057-228791... 59 4e-09
10_01_0315 - 3454846-3455465,3455562-3455663,3455828-3455954,345... 54 1e-07
09_01_0042 + 764349-764763,764853-764902,765096-765172,766179-76... 49 5e-06
10_05_0011 - 7822847-7822880,7823653-7823754,7823859-7824106,782... 32 0.47
07_03_0297 - 16383159-16383626 30 2.5
06_03_0232 - 18507872-18508792 29 3.3
06_03_0132 + 17024727-17025265,17025424-17025510,17025617-170256... 29 4.4
>02_04_0336 +
22121913-22122111,22122295-22122344,22122538-22122661,
22122810-22122917,22123610-22124265
Length = 378
Score = 69.7 bits (163), Expect = 3e-12
Identities = 30/71 (42%), Positives = 44/71 (61%)
Frame = -1
Query: 367 AGEVMNEEESVEGKTSVGYVPLMGKQGTFYKKHGLFCLMPQNYPDAVNHTNFPNSVLNPG 188
A EV ++ V+ TS G + GK G Y ++G CL Q +PDAVNH +FP+ ++ PG
Sbjct: 306 AMEVWADQPGVQFYTSNGLAGVRGKGGRVYGRYGALCLETQGFPDAVNHPSFPSQIVRPG 365
Query: 187 EVYVHRIQYKF 155
+VY H + +KF
Sbjct: 366 QVYEHNMVFKF 376
Score = 48.8 bits (111), Expect = 5e-06
Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Frame = -1
Query: 661 RVLRTMLPRVAMGGYDINYCVTQGTAQDLTFHARALHPV-------TGRVMELYSNQPGL 503
R++ +P A+ GYD NY V G A D R L PV TGR ME++++QPG+
Sbjct: 260 RIVGAAVPGGAVSGYDTNYAV-DGAAAD--GERRRLRPVAEVRDGATGRAMEVWADQPGV 316
Query: 502 QFYTGN 485
QFYT N
Sbjct: 317 QFYTSN 322
>03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447
Length = 309
Score = 64.9 bits (151), Expect = 7e-11
Identities = 33/68 (48%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = -1
Query: 679 FDFRVPRVLRTMLPRVAMGGYDINYCVT-QGTAQDLTFHARALHPVTGRVMELYSNQPGL 503
FDFR P + V GGYDINY + + Q + A P +GRV+EL+S+QPGL
Sbjct: 185 FDFRAPAPPGARIADVPGGGYDINYVLDGEADGQGVRKAAVVSEPTSGRVLELWSDQPGL 244
Query: 502 QFYTGNLL 479
QFYTGN L
Sbjct: 245 QFYTGNFL 252
Score = 55.6 bits (128), Expect = 4e-08
Identities = 23/50 (46%), Positives = 30/50 (60%)
Frame = -1
Query: 298 GKQGTFYKKHGLFCLMPQNYPDAVNHTNFPNSVLNPGEVYVHRIQYKFGI 149
GK G Y KHG CL Q+YPDAV++ FP + G+ Y H + YKF +
Sbjct: 257 GKGGARYVKHGGLCLETQDYPDAVHNAKFPTEIYRKGQEYKHYMLYKFSL 306
>04_04_0115 +
22868554-22868749,22868863-22868912,22870009-22870195,
22870226-22870333,22872501-22873165
Length = 401
Score = 63.7 bits (148), Expect = 2e-10
Identities = 25/48 (52%), Positives = 33/48 (68%)
Frame = -1
Query: 298 GKQGTFYKKHGLFCLMPQNYPDAVNHTNFPNSVLNPGEVYVHRIQYKF 155
GK G Y ++G CL Q +PDAVNH NFP+ ++ PG+VY H + YKF
Sbjct: 352 GKGGKAYGQYGALCLETQGFPDAVNHPNFPSVIVRPGQVYKHEMVYKF 399
Score = 50.8 bits (116), Expect = 1e-06
Identities = 28/55 (50%), Positives = 34/55 (61%), Gaps = 7/55 (12%)
Frame = -1
Query: 622 GYDINYCVTQGTAQDLTFHARALHPVT-------GRVMELYSNQPGLQFYTGNLL 479
G+D NY V G D+ HA AL VT GR +EL++NQPG+QFYTGN L
Sbjct: 294 GFDTNYAVDGG--DDVDAHAHALRRVTVVRDGKSGRSLELWANQPGVQFYTGNFL 346
>04_04_0116 +
22877296-22877482,22877578-22877627,22879057-22879180,
22879266-22879373,22879462-22880084
Length = 363
Score = 59.3 bits (137), Expect = 4e-09
Identities = 24/50 (48%), Positives = 33/50 (66%)
Frame = -1
Query: 304 LMGKQGTFYKKHGLFCLMPQNYPDAVNHTNFPNSVLNPGEVYVHRIQYKF 155
+ GK G Y+++G FCL Q Y DAVNH FP+ + PG+VY H + +KF
Sbjct: 312 IKGKGGKVYQQYGGFCLETQGYVDAVNHPEFPSMTVRPGQVYRHDMAFKF 361
Score = 48.0 bits (109), Expect = 9e-06
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Frame = -1
Query: 679 FDFRVPRVLRTMLPRVAMG---GYDINYCVTQGTAQDLTFHARALHPVTGRVMELYSNQP 509
+DFR P + + +V G GYDINY + + + A A +GR +EL++NQP
Sbjct: 243 YDFRHPTPIGARIRQVMGGRIAGYDINYVID---GEGMRKVAAARDGASGRALELWANQP 299
Query: 508 GLQFYTGNLL 479
+Q YTGN L
Sbjct: 300 AMQLYTGNWL 309
>10_01_0315 -
3454846-3455465,3455562-3455663,3455828-3455954,
3456698-3456727,3456828-3456877,3457004-3457106
Length = 343
Score = 54.4 bits (125), Expect = 1e-07
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = -1
Query: 298 GKQGTFYKKHGLFCLMPQNYPDAVNHTNFPNSVLNPGEVYVHRIQYKF 155
GK G Y KH CL Q +P+A+N NFP+ V+ PGE Y H + ++F
Sbjct: 294 GKGGAVYGKHSGVCLETQGFPNAINQPNFPSVVVQPGEKYKHTMLFEF 341
Score = 42.3 bits (95), Expect = 4e-04
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = -1
Query: 679 FDFRVPRVLRTMLPRVAMGGYDINYCVTQGTAQDLTFHARALHPVTG-RVMELYSNQPGL 503
FDF + + V GGYD NY + G ++ HA L + R ++L+++ PG+
Sbjct: 223 FDFTTEHKIGARINDVP-GGYDHNYVLDSGEEKNGLKHAAKLKDSSNSRTLDLWTDAPGM 281
Query: 502 QFYTGN 485
QFYT N
Sbjct: 282 QFYTAN 287
>09_01_0042 +
764349-764763,764853-764902,765096-765172,766179-766236,
767481-767607,768665-768769,768842-769424,769470-769775,
770048-770139,770391-770440
Length = 620
Score = 48.8 bits (111), Expect = 5e-06
Identities = 20/40 (50%), Positives = 26/40 (65%)
Frame = -1
Query: 304 LMGKQGTFYKKHGLFCLMPQNYPDAVNHTNFPNSVLNPGE 185
++GK G Y KH CL Q +P+AVN NFP+ V+ PGE
Sbjct: 432 IVGKGGAVYGKHAGLCLETQGFPNAVNQPNFPSVVVQPGE 471
Score = 48.0 bits (109), Expect = 9e-06
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Frame = -1
Query: 679 FDFRVPRVLRTMLPRVAMGGYDINYCVTQGTAQDLTFH-ARALHPVTGRVMELYSNQPGL 503
F+F + + + +V GGYD N+ + G + H A+ P + RV++++++ PG+
Sbjct: 363 FNFLTETTIGSRIDQVP-GGYDHNFVIDCGEVKSGLCHVAKVTDPSSSRVLDIWADAPGV 421
Query: 502 QFYTGNLL 479
QFYTGN L
Sbjct: 422 QFYTGNFL 429
>10_05_0011 -
7822847-7822880,7823653-7823754,7823859-7824106,
7824195-7824240,7824368-7825984,7826673-7826797,
7826915-7829083
Length = 1446
Score = 32.3 bits (70), Expect = 0.47
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = -1
Query: 523 YSNQPGLQFYTGNLLPDPDKIVET 452
YSN+P + Y G LL +P+KIV+T
Sbjct: 741 YSNEPPFRGYDGTLLQNPNKIVQT 764
>07_03_0297 - 16383159-16383626
Length = 155
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Frame = -1
Query: 361 EVMNEEESVEGKTSVGYVPLMGKQGTFYKKHGLFCL-MPQNYPD------AVNHTNF 212
EV + +E + G+ L+ K +FY +HG+ L M + Y D +NHTN+
Sbjct: 43 EVKSTKEKFQAIRDDGWESLLEKMYSFYDEHGILRLDMEEEYIDRHKPRKKINHTNY 99
>06_03_0232 - 18507872-18508792
Length = 306
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/18 (77%), Positives = 14/18 (77%)
Frame = +1
Query: 643 ALSSKHGAL*SRI*YHQP 696
ALSSKH L SRI YHQP
Sbjct: 74 ALSSKHAHLLSRIRYHQP 91
>06_03_0132 +
17024727-17025265,17025424-17025510,17025617-17025673,
17028754-17028992,17029161-17029279,17029395-17029481,
17029570-17029629
Length = 395
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = +2
Query: 449 WSLDYFIWIRQKIPGIELQARLVTVQLHNSSGYWMEGSGMKS 574
WS + + + ++P +LQ ++++ L+ +S WM G+ S
Sbjct: 184 WSYEILVLLSGRLPNPKLQTSVLSISLNTASLVWMIPFGLGS 225
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,400,183
Number of Sequences: 37544
Number of extensions: 407612
Number of successful extensions: 843
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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