Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10i18
(773 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase |Schizosaccharo... 29 0.56
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 29 0.74
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.98
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 28 1.7
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 27 3.9
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.9
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 26 5.2
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch... 26 6.9
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 26 6.9
>SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 29.5 bits (63), Expect = 0.56
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Frame = -2
Query: 589 PPERRDKIKSALEEDYFLSPEQTEQYFQALSESSK--RWSGPGGTV--NRKELIDKQKEL 422
P +R+ +++ +E LS E+TE+YF+ +S+ W+ P V +R+EL + +E
Sbjct: 115 PLQRQVRVEGIIER---LSREETEEYFKTRPRNSRIGAWASPQSEVIADREELEKRVEEY 171
Query: 421 QQR 413
+++
Sbjct: 172 KKK 174
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 29.1 bits (62), Expect = 0.74
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +1
Query: 244 DSTEMVSVLPIFQRLSPAQRQRCF---STCSILASLFVLLLCN 363
D E+V V + LSP+ R + + + CS LA L+ LL+CN
Sbjct: 537 DLMEIVLVAFKYLHLSPSNRLQLWLKVAYCSALADLYELLMCN 579
>SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1079
Score = 28.7 bits (61), Expect = 0.98
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -2
Query: 442 IDKQKELQQRQKWLVNFSAQVAYHLCDYIAKGQKEMLVSNRLRSIADVVL 293
+D+ E Q + FSA V YHL D QK++L R S +DV +
Sbjct: 894 VDRDAEDLAEQLGVKIFSANVIYHLFDAFTAHQKKILEQKREES-SDVAV 942
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 27.9 bits (59), Expect = 1.7
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = -2
Query: 733 KF*KKVDSEGSNQKIPPRL-RRNMERVEMLAR-PTARRLRSLWDEKCAILPPERRDKIKS 560
K+ K VD+E N K PP L ++E ++ A P AR L ++ ++ A+L +R +
Sbjct: 9 KYQKPVDTEEENDKNPPPLDEGDIELLKSYATGPYARELAAIKEDTEAVL--KRINDTVG 66
Query: 559 ALEEDYFLSP 530
E D L+P
Sbjct: 67 IKESDTGLAP 76
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 26.6 bits (56), Expect = 3.9
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = -2
Query: 514 YFQALSESSKR--WSGPGGTVNRKEL-IDKQKELQQRQKWLVNFSAQVAYH 371
Y L E+ +R W + L +D++KEL R+ WL +FS + H
Sbjct: 362 YIDILMEALRRTEWQESYNVSHDSSLPLDQEKELSLRKSWLSHFSNLLFNH 412
>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -2
Query: 460 VNRKELIDKQKELQQRQKWLVNFSAQVAYHLCDYI 356
VN+ I K+K L+ R K L++ + V +HL +I
Sbjct: 121 VNKLIPIPKKKVLKNRAKSLLSIKSHVHFHLIPFI 155
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 169 ADALEALEYDGHDEHMRLDAEKPFF*MKLIRDRYEKRLS 53
+DAL+ + Y + LDAEK F +++ D+ K LS
Sbjct: 40 SDALDKIRYQSLSDPHALDAEKDLF-IRITPDKENKILS 77
>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -2
Query: 262 KPSRSNPGRLARFMVAISDRIAVWIENAV 176
KP+RS RL V D +WI N V
Sbjct: 167 KPARSKHCRLCNICVEKFDHHCIWINNCV 195
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 25.8 bits (54), Expect = 6.9
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 8/43 (18%)
Frame = -2
Query: 166 DALEALEYDGHDEHMR---LD-----AEKPFF*MKLIRDRYEK 62
D+LE+LE DE ++ LD ++ P F M++ DR+EK
Sbjct: 658 DSLESLELGHEDEQVQKGPLDVDMDHSQTPLFEMRVFHDRFEK 700
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,144,565
Number of Sequences: 5004
Number of extensions: 64686
Number of successful extensions: 237
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -