Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10i18
(773 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0661 - 26009838-26010950,26011302-26011802 30 2.3
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336... 30 2.3
10_08_0735 - 20200229-20200693,20200813-20201823,20202172-202022... 29 4.1
03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,589... 29 4.1
08_02_1448 - 27168389-27172021 29 5.4
07_03_0574 - 19629875-19631032 29 5.4
04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019 28 7.2
09_06_0347 + 22445962-22446154,22446495-22446616,22446764-224468... 28 9.5
08_02_1449 - 27174451-27178005 28 9.5
07_03_0358 - 17177253-17177369,17177635-17177931,17178961-171790... 28 9.5
02_05_0417 - 28796121-28796743,28796829-28796925,28797010-287970... 28 9.5
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 28 9.5
>11_06_0661 - 26009838-26010950,26011302-26011802
Length = 537
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = -2
Query: 673 RNMERVEMLARPTARRLRSLWDEKCAILPPERRDKIKSALE 551
R ++ VE++A AR LR W+E+ AIL E +++ALE
Sbjct: 493 RQLQAVELVAHTAARCLRLQWEERPAIL--EVVANLETALE 531
>02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,
3366324-3366449,3367056-3367262,3367399-3367492,
3367575-3367621,3367705-3368157,3368261-3368560,
3368656-3369114,3369189-3369410,3369659-3369890,
3370051-3370422,3371210-3371322,3371682-3371903,
3371977-3372180,3372308-3372572,3373123-3373311,
3373441-3373768,3373843-3374248,3374339-3374648,
3375677-3375837,3376825-3376998,3377265-3377609,
3377713-3377754,3378585-3378734,3378847-3379002,
3379088-3379540,3379651-3379966,3380402-3380839,
3381475-3381697,3383538-3383852,3384033-3384095,
3384699-3384903,3385362-3385425,3386014-3386204
Length = 3048
Score = 29.9 bits (64), Expect = 2.3
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Frame = -2
Query: 580 RRDKIKSALEEDYFLSPEQTEQYFQALSESSKRWSG---PGGTVNRKELIDKQKELQQRQ 410
R+ ++ A +ED + ++ F+ALSE WS P TV +L + + ++R
Sbjct: 2037 RKAALQLAFDEDQQIIADKWIHIFRALSEERGPWSANPFPNSTVTYWKLDKTEDKWRRRL 2096
Query: 409 KWLVNFSAQVAYHLCDYIAKGQKEMLVSNRLRSIADVVLERVAEIL 272
K N+ + LC +K E S+ S++ + E++ +L
Sbjct: 2097 KLKRNY--KFDERLCQPPSKFSNESNASSVNPSVSAKIPEKMKHLL 2140
>10_08_0735 -
20200229-20200693,20200813-20201823,20202172-20202272,
20203424-20203562
Length = 571
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +2
Query: 572 VSSFGRQNCAFFVP*RAQATSRWPCQHFHPLHVTT*AWWYFLVTSFRI-HLFLKFLHSVR 748
+ S +CAF A + +F +H+TT W FL S + HL L F H +
Sbjct: 212 IQSLCLYSCAFHPDQGACSFRNLKRVYFSLVHITTEELWIFLYNSLSLEHLELGFCHKIA 271
Query: 749 NLLPIP 766
L IP
Sbjct: 272 -CLKIP 276
>03_02_0143 -
5888005-5888088,5888818-5888949,5889485-5889634,
5890540-5890710,5890840-5891007,5891139-5891234,
5891777-5891839,5891949-5892114,5892207-5892274,
5892646-5892789,5893111-5893176,5893329-5893520,
5894567-5894657,5895241-5895329,5895521-5895583,
5895698-5895823,5895902-5895991,5896059-5896181,
5896503-5896619,5896704-5896904,5897643-5897723,
5897897-5897977,5898083-5898184,5898264-5898488,
5898571-5898726,5898798-5899010,5899306-5899455,
5900082-5900204,5900299-5900364,5900555-5900620,
5900686-5900817,5900891-5900965,5901355-5901438,
5901516-5901668,5901741-5901806,5902044-5902205,
5902272-5902388,5902495-5902566,5902702-5902761,
5902869-5902985,5904131-5904430,5904518-5904622,
5905710-5905775,5905853-5906297,5906399-5906567,
5906684-5906736,5906819-5906925
Length = 1981
Score = 29.1 bits (62), Expect = 4.1
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Frame = -2
Query: 532 PEQTEQYFQALSESSKRWSGPGGTVNRKELIDKQKELQQRQKWLVNFSAQVAYHLCDYIA 353
P + +QY + + S PGG VN + L D Q +L R V ++A LC +
Sbjct: 193 PAEHDQYDASSASVSHNSVSPGGYVNLRWLKD-QCDLITRSGGSVLSGDELAKALCRVLL 251
Query: 352 KGQK-EMLVSNRLRSIADVVLERVAEILGEPK 260
+ + + L + D E V ++L K
Sbjct: 252 SNKAGDEIAGELLDLVGDAAFETVQDLLSHRK 283
>08_02_1448 - 27168389-27172021
Length = 1210
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 244 DSTEMVSVLPIFQRLSPAQRQRCFSTCSI 330
D E++S+L + R P++ ++CF+ CSI
Sbjct: 400 DKDEILSMLKLSYRHLPSEMKQCFAFCSI 428
>07_03_0574 - 19629875-19631032
Length = 385
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -2
Query: 217 AISDRIAVW-IENAVYRADALEALEYDGHDEHMRLD 113
A++DR+ V +A RA EAL YDG ++ +R D
Sbjct: 120 AVADRLYVLDTSHAARRATCFEALVYDGVEDPLRAD 155
>04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019
Length = 508
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +2
Query: 650 HFHPLHV--TT*AWWYFLVTSFRIHLFLKFLHSVRNLLP 760
H H LH+ TT W+ VT + +++F+K + + LLP
Sbjct: 272 HRHGLHLLGTTVCWFVLDVTFYSLNIFMKNIFTEVGLLP 310
>09_06_0347 +
22445962-22446154,22446495-22446616,22446764-22446885,
22447405-22447594,22447874-22448014,22448257-22448724,
22448842-22449609,22450185-22450373
Length = 730
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = -2
Query: 694 KIPPRLRRNMERVEMLARPTARRLRSLWDEKC-AILPPERRDKIKSALEEDYFLSPEQTE 518
+I +L ME V+ LAR TA L + + E+C IL E+R + +D L ++
Sbjct: 273 EIEVKLATTMEEVDRLAR-TADELAAKFQEQCEKILVLEKRSAHSDRIIKDLMLQRDKAV 331
Query: 517 QYFQAL 500
+ +A+
Sbjct: 332 REAEAI 337
>08_02_1449 - 27174451-27178005
Length = 1184
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +1
Query: 235 DVLDSTEMVSVLPIFQRLSPAQRQRCFSTCSI 330
DV + E++S+L + R P + ++CF+ C+I
Sbjct: 397 DVGTTNEILSILKLSYRHLPLEMKQCFAFCAI 428
>07_03_0358 - 17177253-17177369,17177635-17177931,17178961-17179032,
17179117-17179383,17179752-17179910,17180194-17180295,
17180696-17180767,17181105-17181200,17181710-17181871,
17181941-17182021,17182837-17183094,17183173-17183275,
17183412-17183542,17184827-17184919,17184999-17185099,
17186271-17186355,17186487-17186701,17186779-17186842,
17187128-17187214,17188922-17189022,17190206-17190397,
17190533-17190599,17191211-17191351
Length = 1020
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = -2
Query: 634 ARRLRSLWDEKCAILPPERRDKIKSALEEDYFLSPEQTEQYFQALSESSKRWSG-PGGTV 458
AR++ +L DE +R+ +++ +ED Q EQ+F+ + E K S PG
Sbjct: 839 ARQI-ALADEARRKAEEQRKAQLERRKQEDELKQVMQQEQHFERVKEQWKTSSNTPGKRK 897
Query: 457 NRKELIDKQKELQQRQK 407
+R + D++ ++R+K
Sbjct: 898 DRSKHEDEEGGGEKRRK 914
>02_05_0417 -
28796121-28796743,28796829-28796925,28797010-28797093,
28797173-28797234,28797316-28797460,28797542-28797961,
28798041-28798090,28798163-28798349,28798426-28798680,
28798785-28798953,28799044-28799177,28799291-28799446,
28799534-28799719,28799798-28799962,28800074-28800190,
28800553-28800762,28800850-28801049,28801135-28801405,
28801481-28801547,28801644-28801942,28802425-28802991
Length = 1487
Score = 27.9 bits (59), Expect = 9.5
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Frame = -2
Query: 517 QYFQALSESSKR--WSGPGGTVNRKELIDKQKELQQRQKWLVNFSAQVAYHL-------- 368
QYFQ +++ K W N EL +K + R++WL NF Q HL
Sbjct: 589 QYFQDIAKHKKDFVWKNDQDD-NDIELAFSKKRITDRKEWLTNF--QSGTHLDTEGKYIK 645
Query: 367 -CDYIAKGQKEMLVSNRLRSIADVV 296
D+I K + +++ LRSI +V
Sbjct: 646 YSDFINKELIQFSMADLLRSIPSMV 670
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 747 RTECKNFKKRWILKEVTRKYHHA 679
R C N KK WI ++V ++Y +
Sbjct: 678 RCACNNLKKEWICQDVLKEYRQS 700
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,356,343
Number of Sequences: 37544
Number of extensions: 424664
Number of successful extensions: 1431
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1431
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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