Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10i14
         (793 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC036816-1|AAH36816.1|  588|Homo sapiens thioredoxin domain cont...    49   2e-05
AF305596-1|AAN04258.1|  588|Homo sapiens sperm-specific thioredo...    49   2e-05
AF202051-1|AAF20909.2|  588|Homo sapiens NM23-H8 protein.              49   2e-05
AF196568-1|AAG28497.1|  330|Homo sapiens thioredoxin-like 2 prot...    38   0.041
BC107054-1|AAI07055.1|  174|Homo sapiens TXNDC6 protein protein.       36   0.22 
AK094830-1|BAC04430.1|  263|Homo sapiens protein ( Homo sapiens ...    36   0.22 

>BC036816-1|AAH36816.1|  588|Homo sapiens thioredoxin domain
           containing 3 (spermatozoa) protein.
          Length = 588

 Score = 49.2 bits (112), Expect = 2e-05
 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
 Frame = -1

Query: 757 KRKIDLFIEIKNEKEFKNILRTHSEALICAEVYSQFVGACTALDRLFTIIKYDWSNGKII 578
           KR++ L   I N+  +  +L+  ++ L   +VY  + G C A+  LF  +K + +  +I+
Sbjct: 5   KREVQLQTVINNQSLWDEMLQ--NKGLTVIDVYQAWCGPCRAMQPLFRKLKNELNEDEIL 62

Query: 577 LLKVP-SDEVDSLRRFRDQSEPVYLFIFVSSFF--INEKNKTLNNKGGIGLL 431
              V  +D + +L+ FRD+ EPV+LF         I   N  L NK  I L+
Sbjct: 63  HFAVAEADNIVTLQPFRDKCEPVFLFSVNGKIIEKIQGANAPLVNKKVINLI 114


>AF305596-1|AAN04258.1|  588|Homo sapiens sperm-specific thioredoxin
           2 protein.
          Length = 588

 Score = 49.2 bits (112), Expect = 2e-05
 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
 Frame = -1

Query: 757 KRKIDLFIEIKNEKEFKNILRTHSEALICAEVYSQFVGACTALDRLFTIIKYDWSNGKII 578
           KR++ L   I N+  +  +L+  ++ L   +VY  + G C A+  LF  +K + +  +I+
Sbjct: 5   KREVQLQTVINNQSLWDEMLQ--NKGLTVIDVYQAWCGPCRAMQPLFRKLKNELNEDEIL 62

Query: 577 LLKVP-SDEVDSLRRFRDQSEPVYLFIFVSSFF--INEKNKTLNNKGGIGLL 431
              V  +D + +L+ FRD+ EPV+LF         I   N  L NK  I L+
Sbjct: 63  HFAVAEADNIVTLQPFRDKCEPVFLFSVNGKIIEKIQGANAPLVNKKVINLI 114


>AF202051-1|AAF20909.2|  588|Homo sapiens NM23-H8 protein.
          Length = 588

 Score = 49.2 bits (112), Expect = 2e-05
 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
 Frame = -1

Query: 757 KRKIDLFIEIKNEKEFKNILRTHSEALICAEVYSQFVGACTALDRLFTIIKYDWSNGKII 578
           KR++ L   I N+  +  +L+  ++ L   +VY  + G C A+  LF  +K + +  +I+
Sbjct: 5   KREVQLQTVINNQSLWDEMLQ--NKGLTVIDVYQAWCGPCRAMQPLFRKLKNELNEDEIL 62

Query: 577 LLKVP-SDEVDSLRRFRDQSEPVYLFIFVSSFF--INEKNKTLNNKGGIGLL 431
              V  +D + +L+ FRD+ EPV+LF         I   N  L NK  I L+
Sbjct: 63  HFAVAEADNIVTLQPFRDKCEPVFLFSVNGKIIEKIQGANAPLVNKKVINLI 114


>AF196568-1|AAG28497.1|  330|Homo sapiens thioredoxin-like 2
           protein.
          Length = 330

 Score = 37.9 bits (84), Expect = 0.041
 Identities = 21/85 (24%), Positives = 43/85 (50%)
 Frame = -1

Query: 757 KRKIDLFIEIKNEKEFKNILRTHSEALICAEVYSQFVGACTALDRLFTIIKYDWSNGKII 578
           K++I L + I  ++ ++ +L   S+ L   +VY  + G C  +  LF  ++ +     + 
Sbjct: 5   KKEIALQVNISTQELWEEMLS--SKGLTVVDVYQGWCGPCKPVVSLFQKMRIEVGLDLLH 62

Query: 577 LLKVPSDEVDSLRRFRDQSEPVYLF 503
                +D +D L ++R + EP +LF
Sbjct: 63  FALAEADRLDVLEKYRGKCEPTFLF 87


>BC107054-1|AAI07055.1|  174|Homo sapiens TXNDC6 protein protein.
          Length = 174

 Score = 35.5 bits (78), Expect = 0.22
 Identities = 16/79 (20%), Positives = 40/79 (50%)
 Frame = -1

Query: 688 SEALICAEVYSQFVGACTALDRLFTIIKYDWSNGKIILLKVPSDEVDSLRRFRDQSEPVY 509
           S+ L   +VY  + G C  +  LF  ++ +     +      +D +D L ++R + EP +
Sbjct: 4   SKGLTVVDVYQGWCGPCKPVVSLFQKMRIEVGLDLLHFALAEADRLDVLEKYRGKCEPTF 63

Query: 508 LFIFVSSFFINEKNKTLNN 452
           LF  +    ++++++ +++
Sbjct: 64  LFYAIKDEALSDEDECVSH 82


>AK094830-1|BAC04430.1|  263|Homo sapiens protein ( Homo sapiens
           cDNA FLJ37511 fis, clone BRCAN2000346, weakly similar to
           Outer arm dynein intermediate chain 1. ).
          Length = 263

 Score = 35.5 bits (78), Expect = 0.22
 Identities = 16/79 (20%), Positives = 40/79 (50%)
 Frame = -1

Query: 688 SEALICAEVYSQFVGACTALDRLFTIIKYDWSNGKIILLKVPSDEVDSLRRFRDQSEPVY 509
           S+ L   +VY  + G C  +  LF  ++ +     +      +D +D L ++R + EP +
Sbjct: 4   SKGLTVVDVYQGWCGPCKPVVSLFQKMRIEVGLDLLHFALAEADRLDVLEKYRGKCEPTF 63

Query: 508 LFIFVSSFFINEKNKTLNN 452
           LF  +    ++++++ +++
Sbjct: 64  LFYAIKDEALSDEDECVSH 82


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,112,508
Number of Sequences: 237096
Number of extensions: 2163577
Number of successful extensions: 3945
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3938
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9701808132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)