Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10i12
(806 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1726 - 29062654-29064414 32 0.47
01_07_0004 - 40354253-40354353,40354598-40354670,40356196-403563... 32 0.47
11_06_0656 + 25926192-25926289,25927530-25927659,25928248-259282... 31 1.1
11_03_0171 + 11111534-11113207 30 1.9
07_01_1037 - 9026198-9026586,9026773-9026937,9027010-9027096,902... 30 1.9
04_04_1355 + 32851514-32851696,32852132-32852224,32852334-328524... 30 1.9
01_01_0907 + 7128397-7128497,7129944-7130022,7130470-7130568,713... 30 1.9
05_01_0224 - 1662818-1663033,1663183-1663266,1663315-1663434,166... 29 3.3
04_04_0293 - 24189344-24189350,24189804-24190026,24190411-241905... 29 3.3
02_05_0672 + 30775458-30775523,30775594-30775662,30775748-307757... 29 3.3
01_06_1368 - 36715630-36715698,36715835-36716284 29 3.3
08_01_0763 + 7324193-7324558,7325376-7325450 29 4.4
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 29 4.4
01_06_0650 + 30872350-30872736,30873388-30873639,30873723-308738... 29 4.4
10_06_0161 + 11344712-11344877,11345870-11346084 29 5.8
06_01_0747 - 5587261-5587356,5587472-5587855,5588133-5588192,558... 29 5.8
03_01_0019 + 167900-168343,168567-168751,169076-169430 29 5.8
02_05_0616 - 30380558-30380822,30380914-30381045,30381138-303812... 29 5.8
02_05_0204 - 26721498-26721545,26721731-26721823,26723822-267239... 29 5.8
09_06_0374 + 22649455-22650024,22650085-22650637,22650812-226511... 28 7.6
08_01_0111 + 850047-850218,850366-850649,851017-851763 28 7.6
>07_03_1726 - 29062654-29064414
Length = 586
Score = 32.3 bits (70), Expect = 0.47
Identities = 22/62 (35%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
Frame = -1
Query: 767 GGDGETSGLADTPKLSGQEL------AXYQACMQHTRPPDCRCPQYSGGEMPQLPPGKEG 606
G DG+ G A S EL + A MQH PP R P G P P G E
Sbjct: 197 GCDGDAGGAAPAGPHSLHELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPEGSEA 256
Query: 605 GW 600
W
Sbjct: 257 WW 258
>01_07_0004 -
40354253-40354353,40354598-40354670,40356196-40356319,
40357821-40358222,40358704-40358732
Length = 242
Score = 32.3 bits (70), Expect = 0.47
Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Frame = +3
Query: 168 CGFAFSPRIATSPSAALLGHGPRSGHARLGSDAARVPRKPHGLRAGARPTVIGCSLQTLE 347
C F FS R+A P +G R+ GSD P + L A A P+ C L+ LE
Sbjct: 110 CRFIFSERLAGHPWGERMGGDGRNA----GSDLHAPPIRTPVLPAHALPS--SCPLEPLE 163
Query: 348 FS-----SGSCFA-VIYPVSGLVSISVDPLL 422
F+ S CFA + P G VS LL
Sbjct: 164 FALLLLPSPFCFANICNPKQGKVSPGSSELL 194
>11_06_0656 +
25926192-25926289,25927530-25927659,25928248-25928294,
25929274-25929388,25929504-25929753,25930079-25930239,
25930372-25930567,25930672-25930836,25930918-25931070,
25931160-25931248,25931385-25931423,25931460-25931681,
25933503-25934165
Length = 775
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/27 (55%), Positives = 15/27 (55%)
Frame = -2
Query: 679 RGRPTADARSTLEGRCRNCRLGRRAAG 599
RGR A AR GRCR R GR A G
Sbjct: 662 RGRRGAGARPAARGRCRRGRRGRAAGG 688
>11_03_0171 + 11111534-11113207
Length = 557
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/70 (31%), Positives = 32/70 (45%)
Frame = -1
Query: 308 GPCAQPMRLPGDPCRVGPKPRMTTPRTMSKQGSAGAGSDPRAKCETTSAVPPLGKSEYQD 129
G C P+++P CR P P +TP S GS PR +T+ V L
Sbjct: 276 GLCGFPLQVP---CRAAP-PSSSTPPPPSAAGSISGAGGPRQPVKTSLIV--LISVADAA 329
Query: 128 GVSKLGAIIM 99
GV+ +G I++
Sbjct: 330 GVALIGVIVV 339
>07_01_1037 -
9026198-9026586,9026773-9026937,9027010-9027096,
9027173-9027245,9027947-9028012,9028096-9028194,
9028710-9028772,9028959-9029345
Length = 442
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -2
Query: 286 GFLGTLAASDPSRA*PLRGPCPSRAA-LGLVAIRGLNAKPH 167
GFL AS PSR P R P+ AA L A RGL + PH
Sbjct: 33 GFLRRGPASSPSRLRPPRPDDPAPAASLSQGAARGLRSPPH 73
>04_04_1355 +
32851514-32851696,32852132-32852224,32852334-32852485,
32852702-32852837,32852947-32853102,32853233-32853312,
32853475-32853568
Length = 297
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +2
Query: 410 RSFA*ALETLRSGGCCTALGISIEAYLKMHWADRSEMLEFQDSQRLARDTVL 565
R +A AL+ SGG L ++++ L+MH +D +E + + Q+L D L
Sbjct: 126 RDYAGALKHTNSGGTMELLAMNVQICLQMHRSDHAEK-QLRIMQQLDEDHTL 176
>01_01_0907 +
7128397-7128497,7129944-7130022,7130470-7130568,
7130654-7130767,7130960-7131102,7131716-7131797,
7132425-7132510,7132879-7133112,7134684-7135162,
7135309-7136027
Length = 711
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -1
Query: 359 PGAKFEGLQRAADDSGSGPC---AQPMRLPGDPCRVGPKPRMTTPR 231
PG +F G+Q + G+ P AQPM +PG P+PRM P+
Sbjct: 579 PGMQFPGMQ-PSPMPGAQPVMMYAQPMMMPGMQFAAMPQPRMYGPQ 623
>05_01_0224 -
1662818-1663033,1663183-1663266,1663315-1663434,
1664527-1664655,1664743-1664988
Length = 264
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = -1
Query: 686 QHTRPPDCRCPQYSGGEMPQLPPGKEGGWSRNEIMGPLLDPKLYP 552
+H PP R P G P P G E W + + P P +P
Sbjct: 193 KHYDPPQRRFPLEKGVPPPWWPEGTEAWWPESVMPSPSWPPPSFP 237
>04_04_0293 -
24189344-24189350,24189804-24190026,24190411-24190529,
24191331-24191578
Length = 198
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 281 PGDPCRVGPKPRMTTPRTMSKQGSAGAGSDPRA 183
P P GP P+ T P +++ A AG P+A
Sbjct: 10 PKAPAAAGPAPKATAPAGPARKAPAAAGPAPKA 42
>02_05_0672 +
30775458-30775523,30775594-30775662,30775748-30775797,
30775869-30775929,30776016-30776381,30776542-30776754,
30776826-30777056,30777502-30777615,30777703-30778495,
30778535-30778905,30779007-30779378,30779448-30780438,
30781068-30781141,30781953-30782030,30782448-30782525
Length = 1308
Score = 29.5 bits (63), Expect = 3.3
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 254 WVRRGKGPQEAAWAARRGPTHCHRLLAA 337
W+ + Q + A R GP HC+ L +A
Sbjct: 715 WISKASASQRSGRAGRTGPGHCYHLYSA 742
>01_06_1368 - 36715630-36715698,36715835-36716284
Length = 172
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = +2
Query: 581 PLSHSDSSRPPSQAAVAASPLQSTAGIGSRAASYAACM 694
P S S S+ S AAVAASPL G G + A M
Sbjct: 29 PASASTSTSTSSSAAVAASPLAQAHGAGEPRRLFEAFM 66
>08_01_0763 + 7324193-7324558,7325376-7325450
Length = 146
Score = 29.1 bits (62), Expect = 4.4
Identities = 21/71 (29%), Positives = 30/71 (42%)
Frame = -3
Query: 729 KTVWSRISVXPSMHAAYEAARLPMPAVLWRGDAATAAWEGGRLESE*DNGSSPRSKTVSR 550
+ + S+ S PS+H P A W + AAW GG+ G + R VSR
Sbjct: 64 RPIQSQPSSHPSLHEDGGDGDKPFKAEDWHQGGSNAAWRGGK-------GGTGRRGGVSR 116
Query: 549 ASRCES*NSNI 517
SR + N+
Sbjct: 117 MSRGRAETHNL 127
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 29.1 bits (62), Expect = 4.4
Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 11/69 (15%)
Frame = -1
Query: 656 PQYSGGEMPQLPPGKEGG------WSRNEIM-----GPLLDPKLYPVRVAASPETPTSRY 510
P G P PP + G W+R E+ GP + P YP RVA PE +
Sbjct: 69 PSDDPGSRPPPPPRRSQGPPQRQQWTREEMRFVKDAGPSITPVSYPARVAPLPEDRPAEE 128
Query: 509 DQPNAFLDK 483
P D+
Sbjct: 129 APPEGPADE 137
>01_06_0650 +
30872350-30872736,30873388-30873639,30873723-30873818,
30874005-30874173,30874452-30874552,30874910-30875002,
30876018-30876089,30876509-30876628,30876709-30876759,
30877621-30877809,30878099-30878266
Length = 565
Score = 29.1 bits (62), Expect = 4.4
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Frame = -2
Query: 370 AKQDPELNSRVCSEQPMTVGRAPARSPCGFL----GTLAASDPSRA*PLRGPCPSRAALG 203
A + P+L + + PM PA +P L G +S+PSR+ P P P G
Sbjct: 12 ASRSPQLGAALIRSAPMRCPPLPAAAPTASLLSWRGFTPSSEPSRSAPPPPPLPMPPFAG 71
Query: 202 LVA 194
+A
Sbjct: 72 FLA 74
>10_06_0161 + 11344712-11344877,11345870-11346084
Length = 126
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = +2
Query: 230 SSEWSCAAWVRRGK-GPQEAAWAA 298
S +W CA W+RR A WAA
Sbjct: 12 SGDWRCAGWLRRADWAASRAGWAA 35
>06_01_0747 - 5587261-5587356,5587472-5587855,5588133-5588192,
5588428-5588484,5588663-5588800,5588901-5588966,
5589234-5589452,5589522-5589737,5589813-5589884,
5589952-5590205,5590356-5590525,5590840-5591029,
5592211-5592331,5592838-5592921,5593003-5593365,
5594530-5594724,5594938-5595933,5596329-5596370
Length = 1240
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -1
Query: 401 RNKTTY--RVDYCETGPGAKFEGLQRAADDSGSG 306
RN Y R YC +GPGA E + ++S SG
Sbjct: 1096 RNSIAYSTRTSYCGSGPGASSESATTSVNNSYSG 1129
>03_01_0019 + 167900-168343,168567-168751,169076-169430
Length = 327
Score = 28.7 bits (61), Expect = 5.8
Identities = 19/72 (26%), Positives = 25/72 (34%)
Frame = -1
Query: 341 GLQRAADDSGSGPCAQPMRLPGDPCRVGPKPRMTTPRTMSKQGSAGAGSDPRAKCETTSA 162
G+ A S S + P P P P + +P T S GS+G G T
Sbjct: 41 GISGNASSSSSNSSTPSIPPPVAPTPTAPTPPIPSPGTGSSNGSSGGGGGGWLNARATWY 100
Query: 161 VPPLGKSEYQDG 126
P G +G
Sbjct: 101 GAPNGAGPDDNG 112
>02_05_0616 -
30380558-30380822,30380914-30381045,30381138-30381279,
30381377-30381569,30381657-30381890,30381992-30382189
Length = 387
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 602 SRPPSQAAVAASPLQSTAGIGSRAASYAACMLGXT 706
S PP+QAA ASP ++ A AA+ + +L T
Sbjct: 13 SPPPAQAAARASPRRAPASAAPVAAAISTALLALT 47
>02_05_0204 -
26721498-26721545,26721731-26721823,26723822-26723931,
26724029-26724129,26724691-26724917
Length = 192
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -3
Query: 477 IEIPNAVQHPPERSVSRAQAKDRQRSKQDHLQGR 376
I +PNA HP +V RA R R HL GR
Sbjct: 8 IVVPNACSHPRNDAVPRA-GSSRSRRSSLHLAGR 40
>09_06_0374 +
22649455-22650024,22650085-22650637,22650812-22651147,
22651171-22652605,22652939-22653062
Length = 1005
Score = 28.3 bits (60), Expect = 7.6
Identities = 19/60 (31%), Positives = 25/60 (41%)
Frame = -1
Query: 773 HVGGDGETSGLADTPKLSGQELAXYQACMQHTRPPDCRCPQYSGGEMPQLPPGKEGGWSR 594
H G G G TP+ G+ +RP D R + GG P PP + GG +R
Sbjct: 293 HDGAGGSRRGEQSTPR-GGRASGSRDRGPGSSRPADARGKRKQGGTPPPSPP-RGGGAAR 350
>08_01_0111 + 850047-850218,850366-850649,851017-851763
Length = 400
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +2
Query: 590 HSDSSRPPSQAAVAASPLQSTAGIGSRAASYAACMLGXTLIL 715
H PP ++ AA+ L ST G AAS AA L+L
Sbjct: 267 HGFMKLPPLESPSAATALSSTPSTGGDAASSAAAAAADHLLL 308
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,230,627
Number of Sequences: 37544
Number of extensions: 708529
Number of successful extensions: 2922
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2917
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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