Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10i12
(806 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 30 1.7
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 30 1.7
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 30 1.7
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 30 1.7
AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical ... 29 3.0
AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical ... 29 3.0
AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical ... 29 3.0
Z70307-10|CAA94328.1| 276|Caenorhabditis elegans Hypothetical p... 29 3.9
Z29443-6|CAA82573.2| 280|Caenorhabditis elegans Hypothetical pr... 29 5.2
L26545-2|AAA20080.1| 280|Caenorhabditis elegans CED-9 protein. 29 5.2
AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical ... 29 5.2
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 28 6.8
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 28 9.0
AF016688-7|AAB66080.1| 726|Caenorhabditis elegans Hypothetical ... 28 9.0
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 30.3 bits (65), Expect = 1.7
Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 5/167 (2%)
Frame = -1
Query: 638 EMPQLPPGKEGGWSRN---EIMGPLLDPKLYPVRVAASPETPTSRYDQPNAFLDKLQSKY 468
E P+ P K+ ++ EI P+ K P +V P +PT + P +
Sbjct: 1537 EKPKSPTKKDKSPEKSITEEIKSPVKKEKS-PEKVEEKPASPTKKEKSPEKPASPTKKSE 1595
Query: 467 PMLYSILQNEASPE--LKQRIDRDRNKTTYRVDYCETGPGAKFEGLQRAADDSGSGPCAQ 294
+ S + E SPE + + + + K+ + D P K +++ + S +
Sbjct: 1596 NEVKSPTKKEKSPEKSVVEELKSPKEKSPEKADDKPKSPTKK----EKSPEKSATEDVKS 1651
Query: 293 PMRLPGDPCRVGPKPRMTTPRTMSKQGSAGAGSDPRAKCETTSAVPP 153
P + P +V KP T+P K+ S +D K T P
Sbjct: 1652 PTKKEKSPEKVEEKP--TSP--TKKESSPTKKTDDEVKSPTKKEKSP 1694
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 30.3 bits (65), Expect = 1.7
Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 5/167 (2%)
Frame = -1
Query: 638 EMPQLPPGKEGGWSRN---EIMGPLLDPKLYPVRVAASPETPTSRYDQPNAFLDKLQSKY 468
E P+ P K+ ++ EI P+ K P +V P +PT + P +
Sbjct: 1537 EKPKSPTKKDKSPEKSITEEIKSPVKKEKS-PEKVEEKPASPTKKEKSPEKPASPTKKSE 1595
Query: 467 PMLYSILQNEASPE--LKQRIDRDRNKTTYRVDYCETGPGAKFEGLQRAADDSGSGPCAQ 294
+ S + E SPE + + + + K+ + D P K +++ + S +
Sbjct: 1596 NEVKSPTKKEKSPEKSVVEELKSPKEKSPEKADDKPKSPTKK----EKSPEKSATEDVKS 1651
Query: 293 PMRLPGDPCRVGPKPRMTTPRTMSKQGSAGAGSDPRAKCETTSAVPP 153
P + P +V KP T+P K+ S +D K T P
Sbjct: 1652 PTKKEKSPEKVEEKP--TSP--TKKESSPTKKTDDEVKSPTKKEKSP 1694
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 30.3 bits (65), Expect = 1.7
Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 5/167 (2%)
Frame = -1
Query: 638 EMPQLPPGKEGGWSRN---EIMGPLLDPKLYPVRVAASPETPTSRYDQPNAFLDKLQSKY 468
E P+ P K+ ++ EI P+ K P +V P +PT + P +
Sbjct: 1537 EKPKSPTKKDKSPEKSITEEIKSPVKKEKS-PEKVEEKPASPTKKEKSPEKPASPTKKSE 1595
Query: 467 PMLYSILQNEASPE--LKQRIDRDRNKTTYRVDYCETGPGAKFEGLQRAADDSGSGPCAQ 294
+ S + E SPE + + + + K+ + D P K +++ + S +
Sbjct: 1596 NEVKSPTKKEKSPEKSVVEELKSPKEKSPEKADDKPKSPTKK----EKSPEKSATEDVKS 1651
Query: 293 PMRLPGDPCRVGPKPRMTTPRTMSKQGSAGAGSDPRAKCETTSAVPP 153
P + P +V KP T+P K+ S +D K T P
Sbjct: 1652 PTKKEKSPEKVEEKP--TSP--TKKESSPTKKTDDEVKSPTKKEKSP 1694
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 30.3 bits (65), Expect = 1.7
Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 5/167 (2%)
Frame = -1
Query: 638 EMPQLPPGKEGGWSRN---EIMGPLLDPKLYPVRVAASPETPTSRYDQPNAFLDKLQSKY 468
E P+ P K+ ++ EI P+ K P +V P +PT + P +
Sbjct: 1537 EKPKSPTKKDKSPEKSITEEIKSPVKKEKS-PEKVEEKPASPTKKEKSPEKPASPTKKSE 1595
Query: 467 PMLYSILQNEASPE--LKQRIDRDRNKTTYRVDYCETGPGAKFEGLQRAADDSGSGPCAQ 294
+ S + E SPE + + + + K+ + D P K +++ + S +
Sbjct: 1596 NEVKSPTKKEKSPEKSVVEELKSPKEKSPEKADDKPKSPTKK----EKSPEKSATEDVKS 1651
Query: 293 PMRLPGDPCRVGPKPRMTTPRTMSKQGSAGAGSDPRAKCETTSAVPP 153
P + P +V KP T+P K+ S +D K T P
Sbjct: 1652 PTKKEKSPEKVEEKP--TSP--TKKESSPTKKTDDEVKSPTKKEKSP 1694
>AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical
protein H28G03.2c protein.
Length = 275
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = -1
Query: 299 AQPMRLPGDPCRVGPKPRMTTPRTMSKQGSAGAGSDPRAKCETTSAVPPLGKSE 138
A P +P +GP P P SA A P ++T+ PP G SE
Sbjct: 115 AAPYAVPPPMSLLGPPPFSVPPSVPPPTSSAAAPIVPPPPVQSTAQPPPSGTSE 168
>AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical
protein H28G03.2b protein.
Length = 298
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = -1
Query: 299 AQPMRLPGDPCRVGPKPRMTTPRTMSKQGSAGAGSDPRAKCETTSAVPPLGKSE 138
A P +P +GP P P SA A P ++T+ PP G SE
Sbjct: 138 AAPYAVPPPMSLLGPPPFSVPPSVPPPTSSAAAPIVPPPPVQSTAQPPPSGTSE 191
>AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical
protein H28G03.2a protein.
Length = 548
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = -1
Query: 299 AQPMRLPGDPCRVGPKPRMTTPRTMSKQGSAGAGSDPRAKCETTSAVPPLGKSE 138
A P +P +GP P P SA A P ++T+ PP G SE
Sbjct: 388 AAPYAVPPPMSLLGPPPFSVPPSVPPPTSSAAAPIVPPPPVQSTAQPPPSGTSE 441
>Z70307-10|CAA94328.1| 276|Caenorhabditis elegans Hypothetical
protein C39E9.9 protein.
Length = 276
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = -1
Query: 785 PNLPHVGGDGETSGLADTPKLSGQELAXYQACMQHTRPPDCRCPQYSGGEM-PQLPPGKE 609
P P GD +G A P G + + + + RPP RCP G P PG++
Sbjct: 91 PGEPGAPGDDGWNGDAGQP---GPDFPLFDQSLIYQRPPCIRCPVGEPGPPGPDGEPGEQ 147
Query: 608 G 606
G
Sbjct: 148 G 148
>Z29443-6|CAA82573.2| 280|Caenorhabditis elegans Hypothetical
protein T07C4.8 protein.
Length = 280
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/57 (35%), Positives = 24/57 (42%)
Frame = -1
Query: 281 PGDPCRVGPKPRMTTPRTMSKQGSAGAGSDPRAKCETTSAVPPLGKSEYQDGVSKLG 111
PG PC V P+ M R M + CE AVP + S YQD V +G
Sbjct: 103 PGLPCGVQPEHEMM--RVMGTIFEKKHAENFETFCEQLLAVPRISFSLYQDVVRTVG 157
>L26545-2|AAA20080.1| 280|Caenorhabditis elegans CED-9 protein.
Length = 280
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/57 (35%), Positives = 24/57 (42%)
Frame = -1
Query: 281 PGDPCRVGPKPRMTTPRTMSKQGSAGAGSDPRAKCETTSAVPPLGKSEYQDGVSKLG 111
PG PC V P+ M R M + CE AVP + S YQD V +G
Sbjct: 103 PGLPCGVQPEHEMM--RVMGTIFEKKHAENFETFCEQLLAVPRISFSLYQDVVRTVG 157
>AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical
protein Y59A8B.7 protein.
Length = 316
Score = 28.7 bits (61), Expect = 5.2
Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 1/91 (1%)
Frame = -1
Query: 422 KQRIDRDRNKTTYRVDYCETGPGAKFEGLQRAADDSGSGPCAQPMR-LPGDPCRVGPKPR 246
K+ D + + Y G G EG AA S P P R +P P P
Sbjct: 115 KKLFDANYDGHEYDPMQARNGEGLPTEG-GPAAGASAKTPSRMPARSVPQKPVTTMRTPA 173
Query: 245 MTTPRTMSKQGSAGAGSDPRAKCETTSAVPP 153
T ++ + + + PRA T +A PP
Sbjct: 174 ATPAAPPTRPTPSRSSAAPRATAPTPTAAPP 204
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 28.3 bits (60), Expect = 6.8
Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
Frame = +1
Query: 532 GLAATRTGYSFGSRRGPIISFRLQPP--SFPGGSCGISPPEYCGHRQSGGLV-CCMHAWX 702
G+ T +FGS+ P F P F G + + + +Q G H +
Sbjct: 56 GIDPITTSKTFGSQTTPKTEFGGAPSLSGFGGNAAAAAANKTSFDQQGNGFGGAAKHGFG 115
Query: 703 NANS*PDSFGVSARPEVSPSP 765
P SFG + P PSP
Sbjct: 116 GVGGAPSSFGANVIPVNKPSP 136
>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
ZK783.1 protein.
Length = 2585
Score = 27.9 bits (59), Expect = 9.0
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Frame = -1
Query: 377 DYCETGPGAKFEGLQRAADDSGSGPCAQPMRLPGDPCRV--GP-KPRMTTPRTMSKQGSA 207
++ ETG FE + + SG GP G +V GP P +TT S S
Sbjct: 944 EWFETGSKGHFESGSKVSVTSGKGPTQSGAEGSGSGPKVPKGPGAPEITTDGEESSSTST 1003
Query: 206 G--AGSDPRAKCETTSAVPPLG 147
G +G P K + + VP G
Sbjct: 1004 GDKSGGKPADKSDNKN-VPKTG 1024
>AF016688-7|AAB66080.1| 726|Caenorhabditis elegans Hypothetical
protein F18A12.1 protein.
Length = 726
Score = 27.9 bits (59), Expect = 9.0
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = -1
Query: 305 PCAQPMRLPGDPCRVGPKPRMTTPRTMSKQGSAGAGSDPRAKCETTSAV 159
P AQ + P R P+P +T P TM++ S PR CET V
Sbjct: 46 PIAQKLVAPEKKSR--PEP-VTNPVTMTRPEPVTQASKPRNVCETPGCV 91
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,850,921
Number of Sequences: 27780
Number of extensions: 498620
Number of successful extensions: 1845
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1843
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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