Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10i07
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    27   3.3  
SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   4.4  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   5.8  
SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual          26   5.8  
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    26   5.8  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   7.6  

>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = -2

Query: 773 NQNIKAAQNKFCDKQMSAGDVGTFSNG---SNIRKFTKNQGPGRPRKTGKIQSSREKDNI 603
           N+  K  +N+    + S+ DV   SN    +   K TK +       +   Q+ +++DN+
Sbjct: 228 NREEKYFENQLHLVKASSSDVSNSSNSFPENRYPKLTKVEKQMTKSVSKTSQTDKDEDNL 287

Query: 602 KLSRSDIQRIKNM 564
             +++ + RIKN+
Sbjct: 288 DFTKNLLTRIKNL 300


>SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 120

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 630 YFSCFSWSS-WPLIFCEFSYIRAI*KCSHIACTHLFVTKLILCRFNILISHFN 785
           + SC ++ S W L    F ++R   + S + C  L + K I   F+I I H +
Sbjct: 17  FLSCCAFMSHWKLKDFSFRFLRMCGERSLVVCYPLKLLKQIRSLFSIAIGHLS 69


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -3

Query: 475  LSLKSITKK--LQKHHVEESNQTRVLISVLNVMKNLLFTASKISIFSPL 335
            + + +IT K  LQK    ESN +R+L++   + K L    + ++   PL
Sbjct: 1155 VGIAAITTKSLLQKDFAAESNPSRLLLAARQMAKTLAGNLAMVTCREPL 1203


>SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 231

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 658 QEDQEKQEKYKALVKKITLNCHDLIY 581
           QEDQ+K+EK   L ++IT+    +I+
Sbjct: 13  QEDQDKREKIIRLSREITIQSKRMIF 38


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -2

Query: 656 GRPRKTGKIQSSREKDNIKLSRSDIQRIKNMLNESRPVMLTLMDPNRTN 510
           G+   T K QS  EKD  K++ +  + +K   +      L L+D N  N
Sbjct: 24  GKRFVTEKSQSQEEKDTSKITENAKEEVKRDTSSLAKESLKLLDLNGLN 72


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 199  ADHLGTRRRRASGLCCYKSSFVYPWNVTQTSS 294
            +D + T    A   CC K   +YPWN    S+
Sbjct: 1488 SDIVSTLSNYACPDCCSKEGKLYPWNTRPRST 1519


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,245,857
Number of Sequences: 5004
Number of extensions: 65167
Number of successful extensions: 165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)