Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10i07
         (840 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0139 + 12247051-12247155,12247250-12247327,12247412-122475...    30   2.0  
11_01_0628 + 5052042-5052863,5053232-5053475,5054136-5054155           30   2.6  
04_04_1093 + 30825722-30826168,30826457-30826608,30826926-308270...    29   3.5  
05_07_0132 + 27903236-27903376,27903498-27903659,27903755-279039...    29   6.1  
02_01_0428 - 3127098-3129254                                           29   6.1  

>06_02_0139 +
           12247051-12247155,12247250-12247327,12247412-12247519,
           12247882-12247944,12248024-12248185,12248424-12248624,
           12248663-12248725,12248915-12249244,12249870-12250034,
           12250110-12251078
          Length = 747

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
 Frame = -3

Query: 481 MDLSLKSITKKLQKHHVEESNQTRVLISVLNVMKNLLFTASKISIFSPLFVKSF------ 320
           +DLS  SI   + +  V   N  RV   +L ++ N+L   S I  FS   + +       
Sbjct: 174 LDLSHDSILHNVDEQTVRSLNGCRVTDKILRLVPNILVCTSCIVYFSDDMLNALWWIRYD 233

Query: 319 --*FLTGYKINLTFALRSTGKRNSIYSN 242
              F + ++  L F +R   KR  +YSN
Sbjct: 234 GRLFASTFRTTLRF-MRFWAKRRGVYSN 260


>11_01_0628 + 5052042-5052863,5053232-5053475,5054136-5054155
          Length = 361

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 660 PLIFCEFSYIRAI*KCSHIACTHLFVTKLILCRFNILISHFN 785
           PL  CE S+ +   +  HI   +L++  +++C+  +L+ H N
Sbjct: 90  PLNTCELSFDQI--RRQHIPRVNLWIRHIVMCKVRVLVLHLN 129


>04_04_1093 + 30825722-30826168,30826457-30826608,30826926-30827048,
            30827240-30827384,30828032-30828093,30828373-30828586,
            30829671-30830585,30830827-30831076,30831164-30831432
          Length = 858

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 7/99 (7%)
 Frame = -2

Query: 785  IKMGNQNIKAAQNKFCDKQMSAGDVGTFSNGSNIRKFT-----KNQGPGRPR-KTGKIQS 624
            +    Q  KA  ++F D ++ A      +  + +++F         G G    +T K+  
Sbjct: 758  LSQAEQEFKAQLDRFADVELDALCSSITALSARMKRFAHPAIGSAAGTGMSTWQTPKVGR 817

Query: 623  SREKDN-IKLSRSDIQRIKNMLNESRPVMLTLMDPNRTN 510
            S   D+ + L +S ++++ ++LNE   V LTL +P   N
Sbjct: 818  SHVSDSQMSLLKSSLEKL-SLLNEENNVKLTLREPELKN 855


>05_07_0132 +
           27903236-27903376,27903498-27903659,27903755-27903903,
           27903999-27904325,27905123-27905323,27906095-27906155,
           27906517-27906718,27906899-27907020,27907143-27907247,
           27907369-27907452
          Length = 517

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = +1

Query: 529 ISVNITGLLSLSMF----LILCISDRDSLMLSFSRELCIFPVFL 648
           IS+N+  L  LS      L+LC S  D+L  +FSREL  + +++
Sbjct: 389 ISINLGPLEELSNLCKADLLLCESGGDNLAANFSRELADYIIYI 432


>02_01_0428 - 3127098-3129254
          Length = 718

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = -3

Query: 505 IHSTSIH*MDLSLKSITKKLQKHHVEESNQTRVLISVLNVMKNLLFTA 362
           + STS+  +D+S   ++  LQ+   + S  T   + VLN+  N LFTA
Sbjct: 110 VSSTSLVILDISFNHLSGALQEFSAQISETTIRPLQVLNISSN-LFTA 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,922,752
Number of Sequences: 37544
Number of extensions: 345916
Number of successful extensions: 758
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)