Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10i06
(264 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 28 0.24
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 27 0.56
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 24 3.0
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po... 23 5.3
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 23 5.3
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 23 5.3
SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomy... 23 5.3
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 23 5.3
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 23 9.2
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos... 23 9.2
SPBC14C8.10 |mrpl24||mitochondrial ribosomal protein subunit L28... 23 9.2
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 27.9 bits (59), Expect = 0.24
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 34 LNVFSQNFHIFIFYEQFLDNQGHLNNLRIILLFV 135
L+ FSQ FH F+ L + HL L + LLF+
Sbjct: 1016 LSKFSQKFHGFLILHDNLKDHIHLEELWLNLLFL 1049
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 26.6 bits (56), Expect = 0.56
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 22 QWIQLNVFSQNFHIFIFYEQFLDNQGHLNNLRIILLF 132
Q ++L+ F + +FY+ DN G LNN + LF
Sbjct: 297 QIVELSPKGYRFLVDLFYQFDRDNDGALNNEELSALF 333
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 24.2 bits (50), Expect = 3.0
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -1
Query: 225 ISETSKLTTMCWLGWAVAMSLFSY--IFLSPNHK 130
+S + T C + W SLF+Y I +S NH+
Sbjct: 315 VSTSDPYTLACLVSWRDNASLFNYAAIIISFNHQ 348
>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 23.4 bits (48), Expect = 5.3
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -1
Query: 123 DNSKVIKMSLVI*KLFIKYENVKVLRE 43
DN KVI + +LF KY+++ +++E
Sbjct: 17 DNDKVIVVVTKNLELFKKYDDINLIKE 43
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 23.4 bits (48), Expect = 5.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 16 SLQWIQLNVFSQNFHIFIFYEQFLDNQGHLNNLRIIL 126
SL+ + N+ Q ++E+ LDNQ L +LRI L
Sbjct: 639 SLKTSKTNLEEQTQLAEKYHEELLDNQQKLYDLRIEL 675
>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 204
Score = 23.4 bits (48), Expect = 5.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 16 SLQWIQLNVFSQNFHIFIFYEQF 84
+L++I L VFS N + FY F
Sbjct: 147 NLKYIFLTVFSANLNALNFYHHF 169
>SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 299
Score = 23.4 bits (48), Expect = 5.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 28 IQLNVFSQNFHIFIFYEQFLDNQGHLNNLR 117
I LN+ +FIF EQ +D+ + LR
Sbjct: 224 IHLNILCVIAQMFIFREQLIDHPSPMTLLR 253
>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 23.4 bits (48), Expect = 5.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 112 LRIILLFVIWRQKYIGEQRHC 174
L +I+ V W + IG RHC
Sbjct: 2 LAVIVAIVRWERAMIGLLRHC 22
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 22.6 bits (46), Expect = 9.2
Identities = 8/31 (25%), Positives = 16/31 (51%)
Frame = +1
Query: 139 WRQKYIGEQRHCYSPTKPTHCG*LGCFRYFF 231
+R+ ++ + C++ KP C GC F+
Sbjct: 65 YRKSHLKIHKRCHTNVKPFSCHYDGCDAQFY 95
>SPBC409.12c |||nuclear telomere cap complex subunit
Stn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 22.6 bits (46), Expect = 9.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 250 QKPMKLKKNI*NIQANHN 197
QK M+ KKN+ I NH+
Sbjct: 137 QKRMRYKKNLTKISKNHH 154
>SPBC14C8.10 |mrpl24||mitochondrial ribosomal protein subunit
L28|Schizosaccharomyces pombe|chr 2|||Manual
Length = 176
Score = 22.6 bits (46), Expect = 9.2
Identities = 8/31 (25%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +1
Query: 22 QWIQLNVFSQNFHIFIFYE--QFLDNQGHLN 108
+W+ NV + FH+++ + +D +G L+
Sbjct: 62 KWLYSNVLEEKFHLYVTSRVLRTIDKEGGLD 92
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,063,893
Number of Sequences: 5004
Number of extensions: 18381
Number of successful extensions: 37
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 53488084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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