Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10i06
(264 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0453 - 17886095-17886868,17887928-17888043,17888300-178884... 28 1.2
06_03_0288 - 19179619-19179714,19180209-19180300,19180408-191804... 27 2.1
04_03_0776 - 19463473-19464252,19464354-19464849,19465460-19465911 27 2.1
03_05_0472 - 24655384-24655764,24655904-24656119,24656197-246563... 26 3.6
11_07_0005 + 27237673-27237885,27238030-27238195,27238439-272386... 25 6.3
09_02_0276 - 6633919-6634296,6635432-6635533,6635636-6635728,663... 25 6.3
08_02_1079 + 24190453-24190483,24191201-24191475,24191619-241919... 25 6.3
05_05_0298 - 23926266-23926442,23926573-23926632,23926822-239270... 25 6.3
09_04_0591 + 18813557-18813663,18814332-18814392,18814526-188146... 25 8.3
02_05_1090 - 34027737-34028582 25 8.3
02_05_0818 + 32004749-32005347,32005905-32006415,32006539-32007300 25 8.3
02_04_0206 + 20916063-20919669,20919816-20920014,20920935-209210... 25 8.3
>11_04_0453 -
17886095-17886868,17887928-17888043,17888300-17888423,
17889734-17889963,17891395-17891452
Length = 433
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 167 LCSPIYFCRQITNSKIILRLLRCP 96
L S +YFC+++TNS +I CP
Sbjct: 228 LQSVLYFCQRMTNSALITVAKNCP 251
>06_03_0288 -
19179619-19179714,19180209-19180300,19180408-19180494,
19180802-19180963,19181032-19181183,19181526-19181872
Length = 311
Score = 27.1 bits (57), Expect = 2.1
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +1
Query: 37 NVFSQNFHIFIFYEQFL 87
NVFS +F +++FY+ FL
Sbjct: 155 NVFSPSFRLYLFYQTFL 171
>04_03_0776 - 19463473-19464252,19464354-19464849,19465460-19465911
Length = 575
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 167 LCSPIYFCRQITNSKIILRLLRCP 96
L S +YFC Q+TN+ ++ CP
Sbjct: 369 LNSLLYFCHQMTNAALVTVAKNCP 392
>03_05_0472 -
24655384-24655764,24655904-24656119,24656197-24656321,
24656432-24656621,24656817-24656911,24657230-24657454,
24657940-24658003
Length = 431
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 187 WLGCSNVFVLLYISVA 140
WLG S VF L+YI +A
Sbjct: 169 WLGLSTVFSLIYIMIA 184
>11_07_0005 +
27237673-27237885,27238030-27238195,27238439-27238692,
27238777-27238989,27239063-27239155,27239258-27239359,
27240495-27240872
Length = 472
Score = 25.4 bits (53), Expect = 6.3
Identities = 7/18 (38%), Positives = 15/18 (83%)
Frame = +1
Query: 58 HIFIFYEQFLDNQGHLNN 111
H+F ++Q+ D++G++NN
Sbjct: 188 HVFPHWKQYKDDEGYINN 205
>09_02_0276 -
6633919-6634296,6635432-6635533,6635636-6635728,
6635802-6636014,6636099-6636352,6636596-6636761,
6636906-6637118
Length = 472
Score = 25.4 bits (53), Expect = 6.3
Identities = 7/18 (38%), Positives = 15/18 (83%)
Frame = +1
Query: 58 HIFIFYEQFLDNQGHLNN 111
H+F ++Q+ D++G++NN
Sbjct: 188 HVFPHWKQYKDDEGYINN 205
>08_02_1079 +
24190453-24190483,24191201-24191475,24191619-24191977,
24192066-24192306,24192391-24192603,24192677-24192769,
24192872-24192973,24194104-24194481
Length = 563
Score = 25.4 bits (53), Expect = 6.3
Identities = 7/18 (38%), Positives = 15/18 (83%)
Frame = +1
Query: 58 HIFIFYEQFLDNQGHLNN 111
H+F ++Q+ D++G++NN
Sbjct: 279 HVFPHWKQYKDDEGYINN 296
>05_05_0298 -
23926266-23926442,23926573-23926632,23926822-23927029,
23927471-23927703,23928806-23928860,23928943-23929649
Length = 479
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -2
Query: 164 CSPIYFCRQITNSKIILRLLRCPWLSKNCS 75
C P + + IL+LLR PW+ +C+
Sbjct: 237 CPPFHAATNREKQQRILQLLRHPWVIGDCA 266
>09_04_0591 +
18813557-18813663,18814332-18814392,18814526-18814639,
18814923-18815054,18815380-18815774,18815896-18815995,
18816099-18816158,18816240-18816326,18816511-18816639,
18816888-18817187
Length = 494
Score = 25.0 bits (52), Expect = 8.3
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +1
Query: 37 NVFSQNFHIFIFYEQFLDNQGHLNNLRIILLFVIWRQKYIGEQRHCYSPTKP 192
NV Q+ + I L Q H +L + LF ++ G RH Y+ P
Sbjct: 327 NVGGQSVNAQIIQNSILGCQSHRPSLWVRALFAPTKRSMAGTARHPYALQHP 378
>02_05_1090 - 34027737-34028582
Length = 281
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -2
Query: 167 LCSPIYFCRQITNSKIILRLLRCPWL 90
LC IYF +TN + L CP L
Sbjct: 102 LCHAIYFRTALTNDSLKALALYCPML 127
>02_05_0818 + 32004749-32005347,32005905-32006415,32006539-32007300
Length = 623
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -2
Query: 161 SPIYFCRQITNSKIILRLLRCPWLSKNCS 75
S +YFC+++TN+ +I +SKNCS
Sbjct: 425 SILYFCQRMTNAAVIA-------MSKNCS 446
>02_04_0206 + 20916063-20919669,20919816-20920014,20920935-20921074,
20921184-20921263,20922759-20922875,20923089-20923136,
20923509-20923601,20923881-20923958,20924114-20924218,
20924543-20925212,20925253-20925350,20925887-20925963,
20926035-20926117,20926208-20926287,20927060-20927139,
20927698-20927743,20928709-20929181,20929234-20929579
Length = 2139
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 170 CLCSPIYFCRQITNSKIILRLLRC 99
CL SP + CR I ++L LRC
Sbjct: 2047 CLSSPFHHCRPIQEGVLVLP-LRC 2069
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,181,426
Number of Sequences: 37544
Number of extensions: 97405
Number of successful extensions: 215
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 14,793,348
effective HSP length: 66
effective length of database: 12,315,444
effective search space used: 258624324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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