Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10i01
         (821 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    28   1.8  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   7.4  

>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/49 (24%), Positives = 31/49 (63%)
 Frame = +2

Query: 407 IVVILNKIICQAFIFYTLNNAQLT*NSILISTKIELHFIIKVKNNFKVL 553
           +V +L+K+I + ++F  L++ Q   +S   S  ++LH+++ ++   K++
Sbjct: 535 LVNLLDKLIREDYVFKELSSIQSYISSHDKSKNLDLHYLVDIRECKKIM 583


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = -1

Query: 761  EDGVHKIDLEAFGRQ--LKLVLKKQEGLIKKDGLKVWKALK 645
            E+  ++ +L  FG Q  LKLVL   +   +K+  K+W++++
Sbjct: 2205 EEATNEWELNYFGLQSWLKLVLADPKKSCEKEFSKIWESMR 2245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,819,947
Number of Sequences: 5004
Number of extensions: 50990
Number of successful extensions: 135
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)